RNA id: TU312506



Basic Information


Item Value
RNA id TU312506
length 203
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G275255
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55415473 ~ 55444161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacacacacacacgcacacacacacacacacacacacacacacacacacacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacacacacacaaaacacacacacacacacaccgttacaTATATTAAAGATCAATTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312503 lncRNA downstream 1754 55413219 ~ 55413719 (-) True G275253
TU312502 lncRNA downstream 2309 55412797 ~ 55413164 (-) True G275252
TU312499 lncRNA downstream 3986 55410143 ~ 55411487 (-) False G275250
TU312496 lncRNA downstream 9768 55405505 ~ 55405705 (-) True G275249
TU312495 lncRNA downstream 10759 55404476 ~ 55404714 (-) True G275248
TU312524 lncRNA upstream 947 55445108 ~ 55446072 (-) True G275273
TU312525 lncRNA upstream 2768 55446929 ~ 55447731 (-) True G275274
TU312526 lncRNA upstream 5879 55450040 ~ 55450325 (-) True G275275
TU312527 lncRNA upstream 7970 55452131 ~ 55452533 (-) True G275276
TU312531 lncRNA upstream 12671 55456832 ~ 55457483 (-) True G275280
XM_036974634.1 mRNA downstream 20470 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 24141 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 33312 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 43806 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 148203 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 335342 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 335342 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 344240 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 344240 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 3986 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 3986 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 296261 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 732668 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2164389 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1826621 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1958823 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2140225 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7270414 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9525388 64969549 ~ 64970755 (-) True G286522

Expression Profile