RNA id: TCONS_00029416


Basic Information

Item Value
RNA id TCONS_00029416
length 5346
RNA type mRNA
GC content 0.37
exon number 7
gene id XLOC_014909
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32766423 ~ 32804535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTCTTGACCCTGTTCAGGTCATGAAGGGGCAAGAGCCTATGCCCAACACTTGCCCATCGGCCTCAAACGGGGATACCAAAGCATCCTGGGAGGACAGCAACAAGGATATGCTTGAAAATGTTGGTTCCAAGAAGCCCAAATCAGGACCTGTGAGACGGGCCAGGAAGGTGGAGGGAGGCATATTTTTTCCCAAACCAGAAAACGCAGTGACCATAGCCGTGTCTTCCCGAGTTATGTTCCGCACAGAGAAAGAGCAGAAGGTGTTTGAGCAGAAAGGCATCGAGGAGTACCTCAGGTATCAGGTGGAGCACGAGAATGAGCCCTTTGCTCCTGGCCCAGCATTCCCATTTGTCAAGgCTCTGGAGGCAGTAAACACCCGGTTGAGGGAGCTCTATCCAGAAAGCGAGGAGCTTTTTGACATTGTGCTGGTAACTTACAACCATGCCCATGTTGGCGTCAGACTCATCAACACCATCAATTACCACAATCTATTCATCGAGCGGTTCTGCATGACGGGAGGCAGTAGCCCCATTGGGTACCTGAAAGCGTTTCATACAAACTTGTATTTGTCTGCCGATGCCGAAAAGGTTCAGGAGGCCCTCTCTGAAGGAATTGCAGCAGCCACCATGTTTATGCCAGAAAAACAGATCGAGGTGTCCGAGACGCAGCTGAGAGTGGCATTTGATGGCGATGCCGTTCTCTTTTCTGATGAGTCTGAGCGCATTTTTAAAGCCCACGGCCTGGACAAGTTCTTCGAGCATgagagggaaaatgaaaacagatTGCTGGATCATGGGCCACTGAAGGGTTTTCTGGAAGTGCTCGGGAAGCTTCAGAAGAAATTCTACGCTAAAGGCCACCGTTTGGACTGTCCCATTCGCACCTACCTCGTGACGGCCCGCAGCGCAGCCAGCTCAGGCATCCGCGCCTTAAAGACTCTCCGTGCCTGGGGACTCGAAACAGACGAGGCTCTTTTCCTGGCCGGGGCTCCAAAAGGCCCCATGCTGGAGAAAATCCGGCCCCACATATACTTTGATGACCAGATGTTCCATGTGGAGGGAGCCGTGGAAATGGGTGCCATCGCTGCCCACGTGCCCTATGGGATTGCACAGAAATACCCGCATAAAAAAAGCAGCAATACAGCAAAATAGCAAAATAGAGACATTCAAATtgcagactttttatttttattttataaactcgGTTTGGATCAGGATCGCAGTGTATTCTCTTCGCCTTTTTTTCCATGTGACCTAAACAAGGCTACATACAACATGTAACTTAAagactacagtaatttatagtagcatttttgaaccatactatagtaacgtgatttaaactgtatataatattgtatttacaacactttgtgaAAGAAAGCTACAGCATGatgtagtattaactatagtgaactgctAACTGTAGTAAATACTGTACTCTACATTTGTTTTTACAACAGTATACTGTGGTGTATTGTATTATAATGTACCTTATAGTTGTACAAAATTTCATTATTAAGTgatttcttaatattattatatgttgtGTTATTATAGCAACTATATATTTACCACAACAGATTGTTTTAAATACTGTACTACAGTGTGGTTCAAAAACTctataaagtttattttaaaatacaatccTACTATATATTAGGTGGCCTACTACTTGgatcaaaaacataaatacaatgtacttactgtgttcataatgcatTTCAGAACACTTGAGGTGGGATTTGGGTAGGGTTAGAGACAGGTTTGCGtgtatgggtaggtttaatggTGGGTTAGGGTGTAAGGAAtgggagaggggtctggatgcagacctggtgcagtgcaatctgagctgcatccaatgctttttaatgggctcacctaaccctacccctcacagtgacttcactcgctccatttgagtgcattgtgtctgacaatgtatcactgagtgatgcaatctcagcttgcatcataaaggctgcatccagatactattgaggaatggtcaacagtgtaattaaagatgtaattaagaaataaaaattgcAGAAATTAATTGCAGATGTAATGTCAGTGGATATTAGTTAacgccacctaatataaagtgagaccttAATTACTATAGGATTTTTTCATTTGGGTTAACCCAATGTGACTCTTGAAATATGCATTATGAATGACCAACGTGCCTCTGGTGAAGCACTGCGACTAATGGTCATTTTCATATAGGCATACACTTTTCTATGATATTTCATGgaaatacaaccccaaatcagaaaaagttggagCATTAtggaaaaaacacaaataaaaaagaaagtagtgatttctaaattaactttgacttgtattttattgcagacaatttGAACAccaaatatttcatgttttgtttagtcaacttcatttaatttgtaaagaaACATCCTTTCCtttcattcagacctgcaacacattccaaaaaagttgggacTGGAGTACTTTGtagctagtaatcaggtaaattggtttaatatgctgtgatttgaaacaggtgattgtaattttgatttggtacaaaagcagcatccaggaaaggtctagtcctttagcaGCAAAGGTGGGCAGAGGAAATCTCCAGATTTCCAACAAATACATgataaaattattcaaatgtttaaaaaaaacaatcttcctcaaagaaagataggaatacatttggatatttcacctttaacAGTGCGTAAAGAACAAGGGGGCAAGCCTAAactgaacaaccgtgatctccAATCCTtcaggcagcactgcatcaagaatcatcattcatTAATAAGCAATATCGCCAAATGGGCTCAGGTCTACTTTGGTAAACCTTTGCCAAATAacacaatacgtagttacatccaTATTTGCCTGTGAAAATCATACTGTACCAAAAGGAAGCCATATGTTAAGTGTCTAGAAGCATCGTCCACTTCTCTGGGCTTGGAGGCATCTGAGATGGACCATCAAACAATAGAAACATGTGCTGAGGTCAAATTAATCAGTATTTtagggttttgttttttttttggaagaaatggACGCCGAGTGCACCGgaccaaaaaagaaaatcagcatccagactgttaccagcaacaagttcaaaaaccagggtctgtcatggtataggGTTATGTCAATGCCCTTGGCAAAAGTatatggcaccattaatgctgaaaagtacatagagattttcgagcacaatatgctgccttctttttccAGGGGCGACCAAGCATATTTctacaagacaatgcaaaaccacattctgcacacattacaaagtcctggctgtagAAGAAGGAGATACAGGTAcctgactggcctgcctgcagtcccgagctgtctccaatagagaattaGTGGTGCGTTTTGAAGTGCAAATTCCAACAATGAAGGCCTATGGTACTGTTGCcaaccttaagacttgtttgcaggaagagtGGGACAAAATAACCCCTGAAACAATTCATTACTTGGTGTCTTTAGTCCCGAAACATCTTTtaggtgttgtgaaaaggaatggcaagattacaaagtggtaaatgctttactgtcccaactgtttttaaaatgtgttgcaagaactaaAATTTGGAATacaagtaaatttagaaatctcaTCTTTCTCTTTGTGTTTTCCATTCTGtctcaactttttctgatttggggttttaCATCATCTTACTGTTAAAACTGAATGCAAGCTGCTATTCTTATGTAAAGCGAATGTGTCAAGTGACAGGACAAATAGTAGTGTTTACACAGTGTGTGTTTGGACCTGCACTGTTATTCAGCAATGGactgtgttttgtttattgaCGGTGTGCgagcaaaacaacaaaataattttacGCAATGTATGTGGTTGTGTATGATGGATAAAGCCTGTAATGTAATGTGCGATACTTAAAGGAAGCCATAATATTTTTACGTTTCAGAAGATGAAATGTATTGAGAATCTATAGATATATTTAGAAACTTgaagtatattttcatttttaaagtgttacttGTAAGTTTATGTTTTTCTCATCTGCATTCAATATAGAATGTCTTTCAAAAGTATGGGGTCAGTATTTTTGTGGGGGAAAGGAATTAATTGATCAAAGacaattaaaaaggaaaaaaagatcactatttcaaataaatgctgtgatTTTTGCATTTCTTTAATCCTAGTAAAAGTGTATCACAAATATTAAGCAACATGACTTATGATTTCACtgttaatcaatttaaaattAGTCAAAAGTGAGTGAACCCCTTGCGTTAAATGTGACAAGTTgactaaaaaagtgagtaaacatgttggAACTTGGAACTATTAAgttgacttatttttttaaattatgcacaTTGCTCGATtttaagtcaatgggtttacttatttttttaggtagtcaactaatctcttttaCAGTGAACACTGATATTATAAAAATGCTAATCAATTCAGccaattaaaatgatttctgacactgaaaattcagttttgacagttaataaattacattttactatatattcaaaaagaaaacattgtaatGTTATATTCTGGTATTGACAGAAAAAAGTTGTTGAAAATAATGTAGCAAttttaagtgatttattttttgttctacaTGAAGCAGAAGACAAAAAAAGTTACCAAGGTCTGatctattttataaattaaactgcatatttatgtacttattttaatttcaccACAGACAAATGAATATAGAGTTTCATATAAACtttacattttggaaaaataCAGCATTTCAAAGGAAATGAATGTAAGTAAAACCAATGCAAATGAAAAAGAAGCGGTCTAATATGTCTACATTTGTCAATAAAATGCTGTTGCTATGGCCTATTTAATATGTCAATACTGAATCTACATTACTTGCCACTATTTTCCCCCAGATACAGTTAAAGACGGaattataacttgcctaattaccaggTAATTATAACTTGCTAGTTCACcaggttaagcctttaaatgtcactttaaactgtatagaagtttcttgaaaaatatcaagtaaaatattgctagctgtcatcatggaaaagataaaataaattagaaatgatgaagtcattaaaactattttgtgtagaaatgtgttgaaaaaaacctctcctttaaacagaaattgggggaaaaaaataaacaagggggctaataattctgacttcaactgtatttttagtGTACATGTAGTTAAATATCCTTATTGTTTTGCACAATCCAAATAAAAGATATCACCATTGTCCTTTAGGATAGTAAAGTAATAATTTTCTAGTTTATTTGTGTTTCAT

Function

GO:

id name namespace
GO:0046085 adenosine metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-423 Predicted to enable 5'-nucleotidase activity. Predicted to be involved in adenosine metabolic process. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human NT5C1A (5'-nucleotidase, cytosolic IA).

Ensembl:

ensembl_id ENSDART00000175613

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029413 lncRNA downstream 134285 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029371 lncRNA downstream 1800762 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 1931326 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 2043919 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 2142691 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00029429 lncRNA upstream 454037 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 466042 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 978248 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 1383657 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 1477351 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00029411 mRNA downstream 55501 32623230 ~ 32710922 (-) False XLOC_014907
TCONS_00029410 mRNA downstream 124698 32622177 ~ 32641725 (-) False XLOC_014907
TCONS_00029409 mRNA downstream 124698 32622177 ~ 32641725 (-) False XLOC_014907
TCONS_00029407 mRNA downstream 165555 32571806 ~ 32600868 (-) False XLOC_014906
TCONS_00029406 mRNA downstream 165600 32571803 ~ 32600823 (-) False XLOC_014906
TCONS_00029418 mRNA upstream 35608 32840143 ~ 32849036 (-) True XLOC_014910
TCONS_00029419 mRNA upstream 60042 32864577 ~ 32888758 (-) True XLOC_014911
TCONS_00029420 mRNA upstream 90844 32895379 ~ 32914305 (-) False XLOC_014912
TCONS_00029421 mRNA upstream 90845 32895380 ~ 32914227 (-) True XLOC_014912
TCONS_00029422 mRNA upstream 111837 32916372 ~ 32928486 (-) False XLOC_014913
TCONS_00029414 other downstream 116642 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029412 other downstream 140544 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029400 other downstream 435793 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 616312 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029389 other downstream 1182022 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029434 other upstream 567829 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 1026834 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 1028985 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029439 other upstream 1042599 33847134 ~ 33850219 (-) True XLOC_014922
TCONS_00029443 other upstream 1084069 33888604 ~ 33915864 (-) False XLOC_014923

Expression Profile

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