RNA id: TU312524



Basic Information


Item Value
RNA id TU312524
length 965
lncRNA type intronic
GC content 0.42
exon number 1
gene id G275273
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55445108 ~ 55446072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCTAAATGAATAATAAATTAAACACATTAGCCTTGGCGTGATTAAGAAGAAACTTTGCGTGGGCCCAAAAAAAGCAAGTGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATTGTGACTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATCGTGGCTGAATGGCTGAATTCCCTGGTGTTTAATAAGATTGGCATGAAGAAATATGAAGGACCTTTGAATGGAAAGAAATGTGCTCCAGTGCTAGTACAgtagtttgtctctctctctctctctctctcttcctctctctctcttcctctctctctctctctctctctcttcctctctctctctttctctctctctctctcagaattcACATGCTAACAAACTGGCAGCTCTGTTCAAGAACAATAGAATAGCCATGTATAAATGGTATTGCTATAATACACCGTCTAATGTAAACAGCTTCAGGAACAGCTATTCAACTCTCTCCTCCAATATAAACTGCATGGAGGGAAATTGGCTCCCAACCTCCTGTAAACTAGATGATTATTTA

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU312506 lncRNA downstream 947 55415473 ~ 55444161 (-) True G275255
TU312503 lncRNA downstream 31389 55413219 ~ 55413719 (-) True G275253
TU312502 lncRNA downstream 31944 55412797 ~ 55413164 (-) True G275252
TU312499 lncRNA downstream 33621 55410143 ~ 55411487 (-) False G275250
TU312496 lncRNA downstream 39403 55405505 ~ 55405705 (-) True G275249
TU312525 lncRNA upstream 857 55446929 ~ 55447731 (-) True G275274
TU312526 lncRNA upstream 3968 55450040 ~ 55450325 (-) True G275275
TU312527 lncRNA upstream 6059 55452131 ~ 55452533 (-) True G275276
TU312531 lncRNA upstream 10760 55456832 ~ 55457483 (-) True G275280
TU312532 lncRNA upstream 12115 55458187 ~ 55458400 (-) True G275281
XM_036974634.1 mRNA downstream 50105 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 53776 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 62947 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 73441 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 146292 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 333431 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 333431 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 342329 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 342329 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 33621 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 33621 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 325896 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 762303 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2194024 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1824710 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1956912 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2138314 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7268503 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9523477 64969549 ~ 64970755 (-) True G286522

Expression Profile


TU312524 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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TU312524 Expression in each Bioproject

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TU312524 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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