RNA id: TU312538



Basic Information


Item Value
RNA id TU312538
length 288
lncRNA type intronic
GC content 0.45
exon number 1
gene id G275287
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55473461 ~ 55473748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagcgagggagagagagagagagatagcgagagagagtgagggagagagagagagagagagagagagagagcgagagagagagagagaaagagagagagagagagagtagtgagaCAAATAATATCAGCTCCCCCcgctcaaaaacacacacagtaatagGGAGAGGTAAACTTAATTAACCCCCAACATCATTATATTGTTCCATGACATCATCACCACAGTACTTAACCCCTGGTAACACTGCCCAGAATAAAACCTCCATGAAATTGAGAGGATCAGAgaatatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312537 lncRNA downstream 1303 55471699 ~ 55472158 (-) True G275286
TU312534 lncRNA downstream 13236 55459968 ~ 55460225 (-) True G275283
TU312533 lncRNA downstream 13559 55459300 ~ 55459902 (-) True G275282
TU312532 lncRNA downstream 15061 55458187 ~ 55458400 (-) True G275281
TU312531 lncRNA downstream 15978 55456832 ~ 55457483 (-) True G275280
TU312539 lncRNA upstream 292 55474040 ~ 55474349 (-) True G275288
TU312540 lncRNA upstream 1012 55474760 ~ 55475476 (-) True G275289
TU312541 lncRNA upstream 2067 55475815 ~ 55476032 (-) True G275290
TU312542 lncRNA upstream 2599 55476347 ~ 55477590 (-) True G275291
TU312543 lncRNA upstream 4009 55477757 ~ 55478048 (-) True G275292
XM_036974634.1 mRNA downstream 78458 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 82129 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 91300 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 101794 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 118616 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 305755 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 305755 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 314653 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 314653 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 61974 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 61974 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 354249 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 790656 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2222377 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1797034 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1929236 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2110638 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7240827 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9495801 64969549 ~ 64970755 (-) True G286522

Expression Profile