RNA id: TU312540


Basic Information

Item Value
RNA id TU312540
length 717
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G275289
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55474760 ~ 55475476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAATTGAGCAGATCAGGGTAGTATTGGAGTGTTGTGGAGGTTTGATAGGGGTGCAGTATCACCTGTGAGAGGGGGCACTCCTTGGCCAGTGTGCTCTGGTTCATCTCCTTGAGAAGCTCCTTGAGGGCGTTCCTCACCGTGGCGTGGTTCCACTGCTCTGACGGAAGGTCCTCCAACTTGGCAAAGCTACAGAACCATAAAAAAAGTCAGTCACTTCCTATTTcctgtcctggggctggttgcacGTAGCCTCGCTAATCTATACTGAATGCTGttttcagtctggtttaacaagGTTAGGTTGCACCAGCCTTGTGTAAGTTCATCACTGCATCATAGTGACTGAATTCTTGAAGTCAGAACTATTTAGTCAATAACTAGGGAATTGGTCTACACTGTCCTATCCAGATATTGTACTATTCCACAAACCACCTATTTATTTGCCTCAACTCACATCAGTCGCTAAGGGCAATACcaaagatttttataactaacccaagatagaccacagcctgttgtttccaatgggagcaaattaatcatagtgggcagatccaagcacgagctagcgagatcctgtTGGCACGTTCTAGCATGTTAGAGAACATCTTCTCTGTGAAGTGAGAGTGTGCAATAACTAAATTCgcccttgcactccttctaaacaatgccattaaaaaaaaaaactttggcaAGGTTTGGGGAATAGAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312539 lncRNA downstream 411 55474040 ~ 55474349 (-) True G275288
TU312538 lncRNA downstream 1012 55473461 ~ 55473748 (-) True G275287
TU312537 lncRNA downstream 2602 55471699 ~ 55472158 (-) True G275286
TU312534 lncRNA downstream 14535 55459968 ~ 55460225 (-) True G275283
TU312533 lncRNA downstream 14858 55459300 ~ 55459902 (-) True G275282
TU312541 lncRNA upstream 339 55475815 ~ 55476032 (-) True G275290
TU312542 lncRNA upstream 871 55476347 ~ 55477590 (-) True G275291
TU312543 lncRNA upstream 2281 55477757 ~ 55478048 (-) True G275292
TU312545 lncRNA upstream 4465 55479941 ~ 55480587 (-) True G275294
TU312546 lncRNA upstream 5519 55480995 ~ 55481267 (-) True G275295
XM_036974634.1 mRNA downstream 79757 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 83428 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 92599 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 103093 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 116888 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 304027 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 304027 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 312925 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 312925 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 63273 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 63273 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 355548 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 791955 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2223676 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1795306 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1927508 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2108910 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7239099 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9494073 64969549 ~ 64970755 (-) True G286522

Expression Profile