RNA id: TU312547


Basic Information

Item Value
RNA id TU312547
length 1021
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G275296
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55482360 ~ 55483380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgttgaaggagtctgtgtgtgtgtgtgtgtgtgtgtgtgtggggggggggggggggggggggggtatcataTGTCTGAATCAGTTCTTCCCCAGGTTGGTATTTGGCTTATCTGTCTGGTATTGTTTATCTACTACTGTGGAGACACACTGACTGTCTGATATAACAGCCTGGGGAAGAGGGTTATCAACCCTGCTCCATCCGCCACCCACATCACGAGGACAGGAGAAACTGCCCCTAAGCACTGACAGGGGCCACATATGTTTGCATTCCCTTAAcgattaaggttaggattgggagtTGGGTACAATAGGTTAGGATTGGGAGTTGGGCACAATAGGTTAGGATTGGGAGTTGGGTACAATAGGTTAGGATTGGGAGTTGGGCACAATAGGTTAGGATTGGGAGTTGGGTACAATAGGTTAGGATTGGGAGTTGGGCACAATAGATTAGGATTGGGAGTTGGGCACAATAGGTTAGGATTGGGAGTTGGGTACAATAGGTTGGGATTGGGAGTTGGGTACAATAGGTTAGGATTGGGAGTTGGGTACAATAGATTAGGATTGGGAGTTGGGCACAATAGGTTAGGAAAGCTGTAGCAGGATAGGGACAATGTCATGGGTCATGGGTGAAACAGGCCTCTCACCTGGCTCTTGTTGGCAGCCACCTTGGCGAACAGCGCCTGAGACACCTTCGCTCTCTTCATCTCCTGCTGGATCTCATCATAGATACCTGACGTGATGTTGACCAGAGACTCCAGCTTCAGGGGCAGGTCTGGGTTGAGGCATGGCGGCTTGGGCTGAGGGAGGATAGGTAGGAGGGACCAGGGAGAGGCGGCCCATAGAGAAAGAACCAGTTTTTAAACCAGGAAGTTGTACCAGAGTTTGCCTGAATGGGTAACACTGCCAACTCTAGTTCACATGTTGTCCCTGTGCCAACGACCAAAGTTTAGGTTTCAAGTAAGAATGACAGGTAATCAGTTGACGATCAGTCAAAGTTTTTTCTTCTTTTAAACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312546 lncRNA downstream 1093 55480995 ~ 55481267 (-) True G275295
TU312545 lncRNA downstream 1773 55479941 ~ 55480587 (-) True G275294
TU312543 lncRNA downstream 4312 55477757 ~ 55478048 (-) True G275292
TU312542 lncRNA downstream 4770 55476347 ~ 55477590 (-) True G275291
TU312541 lncRNA downstream 6328 55475815 ~ 55476032 (-) True G275290
TU312548 lncRNA upstream 174 55483554 ~ 55484217 (-) True G275297
TU312585 lncRNA upstream 62722 55546102 ~ 55546396 (-) True G275328
TU312593 lncRNA upstream 73733 55557113 ~ 55557340 (-) True G275336
TU312606 lncRNA upstream 82662 55566042 ~ 55566241 (-) True G275349
TU312618 lncRNA upstream 94306 55577686 ~ 55577901 (-) True G275361
XM_036974634.1 mRNA downstream 87357 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 91028 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 100199 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 110693 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 108984 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 296123 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 296123 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 305021 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 305021 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 70873 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 70873 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 363148 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 799555 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2231276 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1787402 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1919604 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2101006 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7231195 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9486169 64969549 ~ 64970755 (-) True G286522

Expression Profile