RNA id: TU312548


Basic Information

Item Value
RNA id TU312548
length 664
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G275297
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55483554 ~ 55484217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGATATTACAAACATATCAGACATAAGGAGCCATGTTACCCTCGAGCATACGGAGCCCATGTCCATGCGCGCGGACCATACCACTAAGGTTAGGACTCAGGTTAGGGAAATCTGATGCTACATCAGCTGGTCTCTCTCACCTGTGGTTCTTGGGGCAGGTGTAGTACAGTATGCAGCCTCTCACTGTGGTGGTGCCTGGACTCCTCTTCATACAccaggtctctgtctgtctggagcaGGGTCAGGAACCTCCGGATGGTACACAGATTCTCCCACAGAGTACGGTTCTCTGGGCTAGGGTTCTCCTTCCACCGCAGCAACTCACACAGCCAGCCCTAAGAGGGGTAGATGGGAGCAGAgacaggagaagggagggaggaagggaggggagaaagggatgGGGAGTGGGGGGGGAGATTTGATTATCTATGCTAGACTAGGCCAGTCTTTGACACCAGCTGTTGTGTGCATCCAGCCTCCACCAGCATGCAGTGTTAATAACCTGATCAGTtctcatcctccctctcatcccccatccccctctcactcagcatccccctctcatcccccatcctcctctccctcagcatccctctctcctctcctctctgggccagctgcagcagATGGGTGCAGTGAGCCATGACCCCCAGCCCAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312547 lncRNA downstream 174 55482360 ~ 55483380 (-) True G275296
TU312546 lncRNA downstream 2287 55480995 ~ 55481267 (-) True G275295
TU312545 lncRNA downstream 2967 55479941 ~ 55480587 (-) True G275294
TU312543 lncRNA downstream 5506 55477757 ~ 55478048 (-) True G275292
TU312542 lncRNA downstream 5964 55476347 ~ 55477590 (-) True G275291
TU312585 lncRNA upstream 61885 55546102 ~ 55546396 (-) True G275328
TU312593 lncRNA upstream 72896 55557113 ~ 55557340 (-) True G275336
TU312606 lncRNA upstream 81825 55566042 ~ 55566241 (-) True G275349
TU312618 lncRNA upstream 93469 55577686 ~ 55577901 (-) True G275361
TU312620 lncRNA upstream 93940 55578157 ~ 55578488 (-) True G275363
XM_036974634.1 mRNA downstream 88551 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 92222 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 101393 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 111887 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 108147 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 295286 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 295286 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 304184 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 304184 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 72067 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 72067 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 364342 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 800749 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2232470 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1786565 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1918767 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2100169 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7230358 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9485332 64969549 ~ 64970755 (-) True G286522

Expression Profile