RNA id: TU312623



Basic Information


Item Value
RNA id TU312623
length 247
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G275366
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55581389 ~ 55581635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggggtgatagatgtgaggaagatgagtgtgcaagtagcggtactggggtgcaaaggagcaaaataaataacaatatggtgatgaggtagttggatgggctattttcagatgggctatgtacaggtgcagtgatctgtgagctgctctgacagctggggcttaaagctagtgagggagatatgagtctccacctacagtgatttttgcagttcgtttcagtcattggcagcagagaactgtaaggaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312620 lncRNA downstream 2901 55578157 ~ 55578488 (-) True G275363
TU312618 lncRNA downstream 3488 55577686 ~ 55577901 (-) True G275361
TU312606 lncRNA downstream 15148 55566042 ~ 55566241 (-) True G275349
TU312593 lncRNA downstream 24049 55557113 ~ 55557340 (-) True G275336
TU312585 lncRNA downstream 34993 55546102 ~ 55546396 (-) True G275328
TU312625 lncRNA upstream 3491 55585126 ~ 55585354 (-) True G275368
TU312633 lncRNA upstream 10109 55591744 ~ 55592132 (-) True G275376
TU313712 lncRNA upstream 18252 55599887 ~ 55600189 (-) True G276319
TU313726 lncRNA upstream 42560 55624195 ~ 55625267 (-) True G276333
TU313764 lncRNA upstream 88395 55670030 ~ 55671242 (-) True G276368
XM_036974634.1 mRNA downstream 186386 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 190057 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 199228 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 209722 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 10729 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 197868 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 197868 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 206766 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 206766 55788401 ~ 55821210 (-) True LOC110520238
TU312498 other downstream 169902 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 169902 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 462177 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 898584 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2330305 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1689147 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1821349 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2002751 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7132940 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9387914 64969549 ~ 64970755 (-) True G286522

Expression Profile