RNA id: TU313764



Basic Information


Item Value
RNA id TU313764
length 688
lncRNA type intronic
GC content 0.49
exon number 2
gene id G276368
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55670030 ~ 55671242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtgtgtgatggggaaacCACCAATTACAgctggagagggatgaagtgtgtgtgtgtgatggggaaacCACCAATTACAgctggagagggatgaagtgtgtgtgtgtgatggggaaaccactgattacagctggagagggatgaagtgtgtgtgtgatggggaaaccactgattacagctggagagggatgaagtgtgtgtgtgtgtgatgggggaaaccactgattacAGCTGGAGatggatgaagtgtgtgtgtgatggggaaaccactgattacagctggagagggatgaagtgtgtgtgtgtgatggggaaaccactgattacagctggagagggatgaagtgtgtgtgtgtgtgatagggaaaccactgattacagctggagagggatgaagtgtgtgtgtgtgtgatggggaaaccactgattacagctggagagggatgaagtgtgtgtgtatgtgtgtgtgtgatgatggaAACCACTGATTACAgctggagagggatgaagtgtgtgtgtatgtgtgtgtgtgatgggggaaaccactgattacagctagagagggatgaagtgtgtgtgtgtatgtgtgtgtgtgatggggaaaccactgattacagctggagagggatgaagtgtgtgtgtatgtgtgtgtgtgatggggaaacCACTGATTACAACTGGagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313726 lncRNA downstream 44763 55624195 ~ 55625267 (-) True G276333
TU313712 lncRNA downstream 69841 55599887 ~ 55600189 (-) True G276319
TU312633 lncRNA downstream 77898 55591744 ~ 55592132 (-) True G275376
TU312625 lncRNA downstream 84676 55585126 ~ 55585354 (-) True G275368
TU312623 lncRNA downstream 88395 55581389 ~ 55581635 (-) True G275366
TU313768 lncRNA upstream 4747 55675989 ~ 55676217 (-) True G276372
TU313770 lncRNA upstream 13390 55684632 ~ 55684865 (-) True G276374
TU313775 lncRNA upstream 20470 55691712 ~ 55692135 (-) True G276379
TU313786 lncRNA upstream 31734 55702976 ~ 55703179 (-) True G276389
TU313793 lncRNA upstream 42275 55713517 ~ 55713716 (-) True G276396
XM_036974634.1 mRNA downstream 275027 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 278698 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 287869 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 298363 55357367 ~ 55371667 (-) False armc8
XM_021597405.2 mRNA upstream 108261 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 108261 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 117159 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 117159 55788401 ~ 55821210 (-) True LOC110520238
XM_036974661.1 mRNA upstream 219140 55890382 ~ 55915483 (-) False LOC110520241
TU312498 other downstream 258543 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 258543 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 550818 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 987225 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2418946 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1599540 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1731742 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1913144 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7043333 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9298307 64969549 ~ 64970755 (-) True G286522

Expression Profile