RNA id: TCONS_00029420


Basic Information

Item Value
RNA id TCONS_00029420
length 3268
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_014912
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32895379 ~ 32914305 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATCGATTTGCTTTGAGACACAGCCATCATGTAAGAAGGCGAGAAATTTGAAAGCCACTCCCTCCTGCCGTTCACTCTATCCCGCTGCCAGCAGCAGCTCTCTATCCGTCTCTTAGTGCGGTTCTTATCCGCCTGTTTAAAATGGATCAGGACTGGCAAGCGTTAGCCACACAGCGAGCCGAATACGTGTCTGACCGTATCCGCGGGCTGCTGTCCTCCGGCCTGGACTTCCTCCGGGCCGAGCTCGGGGTTGATCTAGGGATTAAGCCGGAGAAGTGTCCGTCGTGGCTGATTCTGAGCGCGGCGCTGATCGGGCTGCTCTTGCTGGTGGTGCTCGCGGCCTGCGGACGGAGGAAACGCCGAGCGGCTCCCGTTACCGCGAGTCCTAGAAGCATCGCCGCCGCGGCTCCGGTGAAGACCAGCGCACCGCCGAAGACCGTGAAGACCGAGCCGAGCGAGCccaaaaagaagaacaaaaagaAAGCAGCCGATAAGAAGGCCCAGGCTAATGGACAAACAGTGGCTGAACCTCAGGAGGAAATCAAAGTCACTGGGGAGAAAAAGAAAGCACCTGCGCCAACTCCGACTAGAGCACCTGCGCCAGCTCCGACTAGAGCACCAGCTCCAGCTCCGACTCCAGCATCAGCTCCAGCTCCAGTTCCAGTTCCAgcaccaaaaccaaaacaaaaaccagCGCCAACACCAGCACAGCCACCTGCTGATACTAAGACCAAGAAGAACAAGAAGAAAGCAAAGCCAGAGTTGAAGACAGCCCAAGATGTTTCCTCCACTGATGGAAAGGAACCCGATGAAGCAGGTGCTTGGGAAACTAAGGTCAGCAATCGAGAGAAACGTCAGCAGCGAAAAAAAGAGAAGGGCCCTGGCGAAAGCTCTGGCAGTCCTGAAAGCGGAGATCGTGCCAGCATGAAGGTGGAGCAACCTGTGGTTACAGCCACAGCTGGCAACAAGAAGAACAAAGaGTCATCGCGTGTCAAGGCATCGAAGGGTGATGCCATCATTGCCCCAGTGACGTCTGCCTGGAATGATGTGAACTCTGTCAATGGTGGTGGTTTGACAGAGGTTCCAGTGAAGCAGGCcatccaatcaaacgctttaaaCAACGATAAATGGTCTGCTGGGAAAAAGACCTCAGGGCACAAGAACCGTGAAAACTCCACCTGGAAACAAGAGTCAGAGGGGCCATTGACTGGTTTGGATGGTAGAATTAAGGCTGAACCGAACCAAGTGAACTTGACAATGCTTGGACTGAATCCATCAGGTGGAGAGACTGGAAGTAAATCTAGCATTGAAATAGGAAAATGGGACAAGACCCCCGTGGTGGACAGTGAATGGTCCAGTTTCAATGGTCTTGGCTCTGTGGATCCGAGCTCAGACTGGAACGCTCCAAGTGAATTATGGGACAATTTCGAGGCCAAAGTAGATGCTTCTGCTCTGAAGGAGATACCAGTTTCTAAGCCGCTCGTGGAATCAAATGATGACAAAGACAAAGAAGATCCAGCAGGAGGTGGAAAGTCCAAgcgaagaaagaaaaagaagagacCGGAGGAAGAAGGATCAGCTGTTGAGGTGATTCCCGAGGTTTCTGCTCCGGCAGAGAAGAGTGTGACTGTCAAACCTCATCCTCCTCCTCATGTTCCAAAGGATGCTGGATCCAAGCAAAACATCCCTCCGCAGTCTTCACAAAAGAAATCTGATCAGAATTGGGAACCACCGAAGCAAGTTCAGAAGAAAAAAGTCAGAAGGGAAACATGAACCCGCGAATGACACCCAGAATAGCTTATGCAACTAGATTGTTTATGCAATAATTTCACAGTACAGAATTTTATACTGAGGAAATTTACTGtgcttttaacaaaaaaaaaatcaaatcaaaatgaaCTGGGTTAGAGAACTCGGcgcaaaaaaaaagagagagagataaaggcAAACTCTAGAGTAAATGGTGAGCAGTCCATGGGCTGGAACACTACTTATGTGCACTATTACGCGACACTGAGGTTTGTTAAGGAAAAAAACAGATCGTCCTTGATATCAGACAGGCTTACAGTGGAGCGAAAACATTCATGATCATTATTTTCCAATCTAATTTCGAAGCAAGAGTGAGGATCTACTTACTTCTCGGTCGATTACTGTCGCTGCTGTTACTGTTAGCGGCCACAAGGCGGCGCTGCGAGTCGGCGTCTCCTCCAGCAGCTCCGGGTGAAATACTGTAATGTCGTGATGGAAAACCAGAGAACGGTTTTATTACAGAGACCTTTTTTCCCAATGCTAGACCTATTTTCATAGTGCTTTTCTTCCGTCCTGAgtatataaatctatattttaCCCATATAATTGGGTACGTGAATCTTGAAGACGTAACAACTTCCCTTTTTAATCAACTCCAGTTGACTCTAATGCTTTATTTCCTGCAGACTAAAGTAGAAAAAGCCACGCCATATGTATAGAACTATAAGGGCTTTTTTTCTATGGTAAAACTCTTTGTAATTAATTGCACTGTGCTGAAGGTTGTAAAATACCATgtgtatttacttaatttttcttttcttgcACAATGTGAACATTTAATTTCTTTTGGTTCATGTTTGACTGAATAGATTAGTGTTTTTTTGATTGGGAAAGTCGATGATTTCTGATGATTAGCGCAGCTTTAATTCCACGACACTAAAACAGTCTCGGTATCAGGAATCTGTTGCCTTAATCTTGACTTAAGTAGTGCTTTTCTGTTCTCTTCCTCGagtcgttttttttattttttattattatttacaggtTTGGCTTTGCTGTTCATTTCAGATTTGATTGATGTCAGTGTTGCACTTGCATGAATTTAATATCCATTTATAATGATGAACAACGTCCTGATTCTCTGTCCACTCGTGCAAGTACCGCTCACTGTAAATAGGCTTTAAtgaatgatgacgatgatgatgatgatgaatggatgtttttaaatgcatattcaTATTTGGGTTGACTCGGTGGTGTTTTGCCCATGgtcggttttttttttttgtaaatttgactaGATGATGTGTTTTCTGAGGCGTCAGATTGCCTGCCTTAGGTTATCATTCTAGAGGTTACAAAATGATGTATTTCTACCGGTTTCTGGATTTGCGGATGATCATGTTTACTTCAGTCGATGCAATATTTCTATGTTGATTTGTTCAATAAAAAGAAGGCCGCTGTTTGAGCTTAGAGCTGGTGAttttgttcaataaaagaaaatgaagttTGAGCTCA

Function

GO:

id name namespace
GO:0045766 positive regulation of angiogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-615 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

Ensembl:

ensembl_id ENSDART00000124246

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029413 lncRNA downstream 263241 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029371 lncRNA downstream 1929718 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 2060282 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 2172875 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 2271647 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00029429 lncRNA upstream 344267 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 356272 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 868478 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 1273887 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 1367581 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00029419 mRNA downstream 6621 32864577 ~ 32888758 (-) True XLOC_014911
TCONS_00029418 mRNA downstream 46343 32840143 ~ 32849036 (-) True XLOC_014910
TCONS_00029416 mRNA downstream 90844 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029415 mRNA downstream 90844 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029417 mRNA downstream 112006 32770614 ~ 32783373 (-) True XLOC_014909
TCONS_00029422 mRNA upstream 2067 32916372 ~ 32928486 (-) False XLOC_014913
TCONS_00029423 mRNA upstream 3826 32918131 ~ 32928470 (-) True XLOC_014913
TCONS_00029424 mRNA upstream 16171 32930476 ~ 32944050 (-) False XLOC_014914
TCONS_00029425 mRNA upstream 16174 32930479 ~ 32940040 (-) False XLOC_014914
TCONS_00029426 mRNA upstream 19459 32933764 ~ 32937582 (-) True XLOC_014914
TCONS_00029414 other downstream 245598 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029412 other downstream 269500 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029400 other downstream 564749 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 745268 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029389 other downstream 1310978 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029434 other upstream 458059 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 917064 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 919215 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029439 other upstream 932829 33847134 ~ 33850219 (-) True XLOC_014922
TCONS_00029443 other upstream 974299 33888604 ~ 33915864 (-) False XLOC_014923

Expression Profile

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