RNA id: TU313794



Basic Information


Item Value
RNA id TU313794
length 305
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G276397
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55717816 ~ 55718120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaatcagtcttcatACAAAATTGTCTGTAGTGGCtgaactattatgacccctctatggaacaatgagactctcacaaacacgatagtgttctccattttgctccACGATCCCCACAAGCGTCTAGGGACTAGTCTGAAGTTGGTATAGCCAATCTGCCAACTAATATGACCCCTTGGTGCAAAGGTGAGACTCACGAAATGTCTGTTTGCTCTAGGATGCTCACAGAcctcacaagactcatctgaaggtccccggtaccagttgaaaaagtGTATGGAAGTATATgtggagactgtttagtgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313793 lncRNA downstream 4100 55713517 ~ 55713716 (-) True G276396
TU313786 lncRNA downstream 14637 55702976 ~ 55703179 (-) True G276389
TU313775 lncRNA downstream 25681 55691712 ~ 55692135 (-) True G276379
TU313770 lncRNA downstream 32951 55684632 ~ 55684865 (-) True G276374
TU313768 lncRNA downstream 41599 55675989 ~ 55676217 (-) True G276372
TU313797 lncRNA upstream 3473 55721593 ~ 55721866 (-) True G276400
TU313798 lncRNA upstream 4071 55722191 ~ 55722410 (-) True G276401
TU313841 lncRNA upstream 15380 55733500 ~ 55733834 (-) True G276443
TU313843 lncRNA upstream 20250 55738370 ~ 55738588 (-) True G276445
TU313844 lncRNA upstream 21302 55739422 ~ 55739756 (-) True G276446
XM_036974642.1 mRNA downstream 2031 55592364 ~ 55715785 (-) True LOC110504309
XM_036974634.1 mRNA downstream 322813 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 326484 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 335655 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 346149 55357367 ~ 55371667 (-) False armc8
XM_021597405.2 mRNA upstream 61383 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 61383 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 70281 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 70281 55788401 ~ 55821210 (-) True LOC110520238
XM_036974661.1 mRNA upstream 172262 55890382 ~ 55915483 (-) False LOC110520241
TU312498 other downstream 306329 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 306329 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 598604 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1035011 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2466732 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1552662 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1684864 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1866266 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6996455 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9251429 64969549 ~ 64970755 (-) True G286522

Expression Profile