RNA id: TU312761


Basic Information

Item Value
RNA id TU312761
length 2884
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G275495
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55788403 ~ 55791421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATTCAATAGTCCACTTTATTATTGTAACAAAACATGATCAGAATTATTTACAATTGAATAAcatattaaaaaaacaacaacacatgaaCGAGGCAACAATCTTCTCTAACAGGATGGATGGGGGTTACAGGGATGTTTTACAGTGAAACAGATTTTACTCTACATATTTGCCAAGGATGTCAGCATCACGGAACAGGAAACATGCCTTGTCTTCCAGGTCGACTTTAGTTCCTCCATACTCTGGCAGAAGGACCGTCTCTCCAACTTTGACACTCATGGGTGTCAGCTTCCCTTTCTGAATGagaacagtagaaaaaaaagattgCTGTATTGTATCTGGGCATTGTGAAATCTGATAAGCCAGTTAGACAACTCAGACAGACTGTAAGCCACAATTGTAGACAGACTCCAGTTAGTTACACAAATCATACATAAGCTACTGTTTAGCCAGAGTGTAAGATCGAAGTAAATTACCTGGTTTGTGGAGCCTGGTCCCACTGCGACCACTGTGGCCTGCAGAACCTTGCCCTGGGCCTTCTCTGGCAACATGATGCCCCCCTTTGACATAGTCTCCGCAGCCAGACGCTCCACTAGCACCCGGTCAAACATGGGAAGGAATTTCCTGAAAGCCTAAAAGATGTATGAGAACGGTTTTATGACGGAGACAACGTACAACAAAACATTGAAACAGATATAATCTACATAGCTCATCTGAGGTTGCGAAGTGTTGGACTCTTCTTCAGTGAGTACTTGACATTCCAATTGTTATACCCTCAAATTGCCACTAGCTAGAGTTTGATCCATTGTGTGAACTGAAAAAGGCTTAAGTAATACAAATGCACAAGGGGCCCCTTCAATAGCCAAAAGGAGATGTGTTGTAACCACCTGCCATCATCTGCTGAAAATAAGGATAATTTTGTGGGGGactgtttatttaactaggcaagtcagttaagaatttgttcttatttacaatgacggcctactccggccaacgctgccctatgggactcccaatcatggtcagatgtgatagagcctggattcgaaccaggtactatagtgacacctcttgcactgagatgcagtgccttaaactgcTGTGCCACTCTGGAGCCCCAGTGTACACCATTCAAAACCTTAAGGTGGATTCCAAGAGTTCCTGGCTTGGTAATTGTAGTTGCTCTTTTTGAAAGGCTATTTTTGTGAACGTCCAAAATGAATCACATCTGTGAAAGAGACTTTCATTTGGCTCCTTGACTTGTATTTAAGGTTAGGCCTACTACCATTTAAGCGATACTGAAAAAAAGGGCACTTTGGGATCTAAATTAACATATATTTTAGCTGAATGTATCCAAATGAGCTTGCACACGGAACACAAGAAACTAGTCACTAAAGGTATACATAAACCTACTACAGGTTAGTGGTACTCTATGCAAAATAGTTGGGAGTCAGTGAAGCTGACAATATGGTGGATGCCCCACAGGCTGTGGAGATTCCGTGTCGTTCAACAGTTTTAGGGAAACTGATATGCTGATCGTGAAGGTGGATTTTGTGGCTTTTATTGTATGTGATTAATTGTCCTGCCCAAATGAACAAGGAGTCCAAGGAACTGGCCATAATTGTATTTGCAGCTGAAAGATTATTGGGTGTCCAGGACTTCACGGCCGAAACATTGCAAGGAATACTGTGCAAAGATGCTCTTCCTTCTCAAGCCCCAGAGTTGACGAGTAGAGGGTTTGTTACTGCCCTTGACTACTAGAAGTGTCCAGGCAATTTGCAAGTAGAGCCTGCCAAAGGCAACAAAGACACCGTTAGTATTCACTATTGAAAAGATGTAAAGCAGCATTtcccaaaggggtgcacatttggggttttgccctaacactacacagctaattaaaatgatcaaagctagatgattatttgaatcagctgtgtagtgctagggcaaaaaccaaaacgtacaCCCTTTGGGGttccgaggaccgagtttgggaaaccctggcttAAAGCAAGCAATTGTTAGATATCTGATGTAGCACAATCTTTAAGCTAAaactacaaaaaaataaaaaaggtatgGATTCTCTCTGTGGCCTGCATAATGCAAGGAGTTTAGGAGTCAACATTTTGAAGATTTGCAACACCAGCTGCCTGTCTGGTAACAGATGCATCTTTGACCTTGAATGAAGGTTGTCGATGAGACAGGGGACAGAGGGTTTGTGGTTCTAGGCTGTTGACTCCtgggcagggctctccaaccctgacCCACAGATAAACTTCTATACTAATCATGGCTTTGATGTTAGACTAAATTCCAGAACAGGTCAGGGAGTGTGCTCACACACCCCCACATGGGCCCAAAAATctatcaaactttatttgtgtCACATTCTTCCTAAAcaggtgtagacaaacagtgaaaCCTGGGCAAGGCTTTGTGGGGTTTAGTAGGCTCAAGGACCCAGACGTCAAGAGATAACATTGAACAAAAACAAATAATTCGAGGTCTATTCTTCAGTGACCGGGGTTTCAGATCCCATTCTAACATCTTTAGAATACTGTGCAATATTCCCAAGCAGAATTGTGCAATCTAGTGCGGCAAAATGTATGGACAAATAAAATGCTGTGACGCTGTTGAACATGGGGTCACGGCTTCTGCGTTACCCGGAACTGGTTGATAGCCGGTAATTCCCTTTTTCGTTGTGCAAGGGCAGACAGTGAAATCAACTAGAACATACaataggtcaaataaaaataccACACTTGTGCACATATCAATTTAGATAGCAACAGCAAATGCTTCTACTCATCACTTTATTCGTTCTTCATAGTTCACTAGTACCCATCAACTACAGTGCCAATTGTGAAACTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312766 lncRNA upstream 19990 55768059 ~ 55768413 (+) True G275500
TU312764 lncRNA upstream 20427 55766012 ~ 55767976 (+) True G275498
TU312749 lncRNA upstream 44144 55743985 ~ 55744259 (+) True G275484
TU312745 lncRNA upstream 50490 55737614 ~ 55737913 (+) True G275480
TU312744 lncRNA upstream 52541 55735656 ~ 55735862 (+) True G275479
TU312814 lncRNA downstream 79277 55870698 ~ 55903415 (+) True G275536
TU312823 lncRNA downstream 109556 55900977 ~ 55904490 (+) True G275544
TU312825 lncRNA downstream 113401 55904822 ~ 55905288 (+) True G275545
TU312828 lncRNA downstream 118062 55909483 ~ 55910082 (+) True G275548
TU312829 lncRNA downstream 118751 55910172 ~ 55910394 (+) True G275549
XM_021597403.2 mRNA upstream 9089 55741697 ~ 55779314 (+) False rftn2
XM_021597404.2 mRNA upstream 9089 55741703 ~ 55779314 (+) True rftn2
XM_036974636.1 mRNA upstream 291815 55432116 ~ 55496588 (+) False LOC110504295
XM_021597402.2 mRNA downstream 938 55792359 ~ 55800630 (+) True LOC110520236
XM_021597413.2 mRNA downstream 42322 55833743 ~ 55838543 (+) False LOC110520240
XM_021597411.2 mRNA downstream 42323 55833744 ~ 55849324 (+) False LOC110520240
XM_021597410.2 mRNA downstream 42324 55833745 ~ 55849324 (+) False LOC110520240
XM_021597412.2 mRNA downstream 44411 55835832 ~ 55849324 (+) True LOC110520240
TU312074 other upstream 412877 55374546 ~ 55375526 (+) True LOC110520231
TU312073 other upstream 413394 55374546 ~ 55375009 (+) False LOC110520231
TU311754 other upstream 913288 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 1946786 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 2129720 53657461 ~ 53658683 (+) True G273004
TU312821 other downstream 108773 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 123908 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 124091 55915512 ~ 55916133 (+) False G275553
TU312836 other downstream 124323 55915744 ~ 55916133 (+) False G275553
TU314786 other downstream 1473146 57264567 ~ 57264892 (+) True G277296

Expression Profile