RNA id: TU312829


Basic Information

Item Value
RNA id TU312829
length 223
lncRNA type intronic
GC content 0.38
exon number 1
gene id G275549
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55910172 ~ 55910394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTACACAATCATCATAATCTTCACATCATCGTCATAGCATCACCATCTTCACCACTATCGTCATGATCATCATCCTCACCATTATGACCATCATTGCAAAAatcattgcaaaaatcagaaacgttctgtccaaaaatgatgcagaaaaattaatccatgcttttgttacttctaggttagactactgcaatgctctactttccggctacccggataaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312828 lncRNA upstream 90 55909483 ~ 55910082 (+) True G275548
TU312825 lncRNA upstream 4884 55904822 ~ 55905288 (+) True G275545
TU312823 lncRNA upstream 5682 55900977 ~ 55904490 (+) True G275544
TU312814 lncRNA upstream 6757 55870698 ~ 55903415 (+) True G275536
TU312761 lncRNA upstream 118751 55788403 ~ 55791421 (+) True G275495
TU312830 lncRNA downstream 1419 55911813 ~ 55912242 (+) True G275550
TU312831 lncRNA downstream 2022 55912416 ~ 55912647 (+) True G275551
TU312832 lncRNA downstream 2296 55912690 ~ 55913022 (+) True G275552
TU312839 lncRNA downstream 3898 55914292 ~ 55914892 (+) True G275554
TU312834 lncRNA downstream 5499 55915893 ~ 55916133 (+) True G275553
XM_036974662.1 mRNA upstream 20074 55856319 ~ 55890098 (+) False ankrd44
XM_036974666.1 mRNA upstream 20074 55856319 ~ 55890098 (+) False ankrd44
XM_036974663.1 mRNA upstream 20074 55856320 ~ 55890098 (+) True ankrd44
XR_005051418.1 mRNA upstream 66349 55843754 ~ 55843823 (+) True LOC118964369
XR_005051417.1 mRNA upstream 67829 55842205 ~ 55842343 (+) True LOC118964367
XR_005050118.1 mRNA downstream 23169 55933563 ~ 55935062 (+) True LOC118962850
XM_036974674.1 mRNA downstream 31913 55942307 ~ 55948111 (+) False si:dkey-57a22.11
XM_036974673.1 mRNA downstream 32147 55942541 ~ 55948120 (+) False si:dkey-57a22.11
XM_021597416.2 mRNA downstream 32151 55942545 ~ 55948111 (+) True si:dkey-57a22.11
XM_021597418.2 mRNA downstream 38199 55948593 ~ 55953872 (+) False LOC110520246
TU312821 other upstream 9429 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 534646 55374546 ~ 55375526 (+) True LOC110520231
TU312073 other upstream 535163 55374546 ~ 55375009 (+) False LOC110520231
TU311754 other upstream 1035057 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 2068555 53841264 ~ 53841617 (+) True G273094
TU312833 other downstream 4935 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 5118 55915512 ~ 55916133 (+) False G275553
TU312836 other downstream 5350 55915744 ~ 55916133 (+) False G275553
TU314786 other downstream 1354173 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1879340 57789734 ~ 57790332 (+) True G277973

Expression Profile