RNA id: TU312830


Basic Information

Item Value
RNA id TU312830
length 430
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G275550
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55911813 ~ 55912242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATGTAATCTCTGCTTAATACAACAGGATGCTTTCTCAGACATCCAGAATGGTTTTCACTCAGCATGATGTCTGTCTTTACCTTGTGGAGATAGTTCCATTCCTTAACAGCCAGTTGACCAACTCCTTCCCCACAATGCAGTTGGGGTATGTACGGAGCCAGTAGCGGTGGTCCTGGAACTCCATACCAGTAGTGTTGTGACAAATCTTCTTCCACAGGTCTTTGAGCTGGGATGAGTCCTACATGTCATCACAGTCAGTCAAAAATGACTTATGTTTGCTTTGTCAAGAATGGATTGTAAATTGGACAGAACAAATtatacagacagagatataggGAAAGATTGAGGATAGagggaagcaagagagagagaaagcgaaagagtaattgcgagatggagagagagggcgagcaaGCGAGCGAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312829 lncRNA upstream 1419 55910172 ~ 55910394 (+) True G275549
TU312828 lncRNA upstream 1731 55909483 ~ 55910082 (+) True G275548
TU312825 lncRNA upstream 6525 55904822 ~ 55905288 (+) True G275545
TU312823 lncRNA upstream 7323 55900977 ~ 55904490 (+) True G275544
TU312814 lncRNA upstream 8398 55870698 ~ 55903415 (+) True G275536
TU312831 lncRNA downstream 174 55912416 ~ 55912647 (+) True G275551
TU312832 lncRNA downstream 448 55912690 ~ 55913022 (+) True G275552
TU312839 lncRNA downstream 2050 55914292 ~ 55914892 (+) True G275554
TU312834 lncRNA downstream 3651 55915893 ~ 55916133 (+) True G275553
TU312841 lncRNA downstream 5073 55917315 ~ 55917548 (+) True G275555
XM_036974662.1 mRNA upstream 21715 55856319 ~ 55890098 (+) False ankrd44
XM_036974666.1 mRNA upstream 21715 55856319 ~ 55890098 (+) False ankrd44
XM_036974663.1 mRNA upstream 21715 55856320 ~ 55890098 (+) True ankrd44
XR_005051418.1 mRNA upstream 67990 55843754 ~ 55843823 (+) True LOC118964369
XR_005051417.1 mRNA upstream 69470 55842205 ~ 55842343 (+) True LOC118964367
XR_005050118.1 mRNA downstream 21321 55933563 ~ 55935062 (+) True LOC118962850
XM_036974674.1 mRNA downstream 30065 55942307 ~ 55948111 (+) False si:dkey-57a22.11
XM_036974673.1 mRNA downstream 30299 55942541 ~ 55948120 (+) False si:dkey-57a22.11
XM_021597416.2 mRNA downstream 30303 55942545 ~ 55948111 (+) True si:dkey-57a22.11
XM_021597418.2 mRNA downstream 36351 55948593 ~ 55953872 (+) False LOC110520246
TU312821 other upstream 11070 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 536287 55374546 ~ 55375526 (+) True LOC110520231
TU312073 other upstream 536804 55374546 ~ 55375009 (+) False LOC110520231
TU311754 other upstream 1036698 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 2070196 53841264 ~ 53841617 (+) True G273094
TU312833 other downstream 3087 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 3270 55915512 ~ 55916133 (+) False G275553
TU312836 other downstream 3502 55915744 ~ 55916133 (+) False G275553
TU314786 other downstream 1352325 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1877492 57789734 ~ 57790332 (+) True G277973

Expression Profile