RNA id: TU312845


Basic Information

Item Value
RNA id TU312845
length 538
lncRNA type intronic
GC content 0.36
exon number 1
gene id G275559
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55919833 ~ 55920370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTAGccctttaaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatggttgctgataatgggtctctgtacacctatgtagatatcccattaaaaatctgccgtttccagctacaatagtcatttacaacattaacaatgtctacactgtgtttctgatcaatttgatgttattttaatggacaaaaaaagcaAGTATAATCCTTGTACCATCtcaaccgctgtgaaatatattttccataccccaaaatattgtattttcagctggtgtacaaaaccgaaacttaagaacaggaagcatagaaatagtgcacaaaGAAAGTTAAGCTATACCGCAGATTTACAAATcagatttctatgtgaatttggttgagtcacccaaaaagttacatattgcagctttaagtgtGTGTACATGAATGTACTTATATGTGTATGCATTGCTGGTGTCCATAATTGTTCCCTTGCTCTCTCTAGATCTAATCTTATCAGCGTAAAGTGATTCACCATCCCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312842 lncRNA upstream 1249 55918061 ~ 55918584 (+) True G275556
TU312841 lncRNA upstream 2285 55917315 ~ 55917548 (+) True G275555
TU312834 lncRNA upstream 3700 55915893 ~ 55916133 (+) True G275553
TU312839 lncRNA upstream 4941 55914292 ~ 55914892 (+) True G275554
TU312832 lncRNA upstream 6811 55912690 ~ 55913022 (+) True G275552
TU312811 lncRNA downstream 28480 55948850 ~ 55949120 (+) True LOC110520246
TU312909 lncRNA downstream 88069 56008439 ~ 56011288 (+) True G275598
TU312988 lncRNA downstream 219884 56140254 ~ 56175231 (+) True LOC110504343
TU313035 lncRNA downstream 292785 56213155 ~ 56213389 (+) True G275716
TU313038 lncRNA downstream 296948 56217318 ~ 56217543 (+) True G275719
XM_036974662.1 mRNA upstream 29735 55856319 ~ 55890098 (+) False ankrd44
XM_036974666.1 mRNA upstream 29735 55856319 ~ 55890098 (+) False ankrd44
XM_036974663.1 mRNA upstream 29735 55856320 ~ 55890098 (+) True ankrd44
XR_005051418.1 mRNA upstream 76010 55843754 ~ 55843823 (+) True LOC118964369
XR_005051417.1 mRNA upstream 77490 55842205 ~ 55842343 (+) True LOC118964367
XR_005050118.1 mRNA downstream 13193 55933563 ~ 55935062 (+) True LOC118962850
XM_036974674.1 mRNA downstream 21937 55942307 ~ 55948111 (+) False si:dkey-57a22.11
XM_036974673.1 mRNA downstream 22171 55942541 ~ 55948120 (+) False si:dkey-57a22.11
XM_021597416.2 mRNA downstream 22175 55942545 ~ 55948111 (+) True si:dkey-57a22.11
XM_021597418.2 mRNA downstream 28223 55948593 ~ 55953872 (+) False LOC110520246
TU312833 other upstream 3700 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 3700 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 3700 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 19090 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 544307 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 1344197 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1869364 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 4132346 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 4132346 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 4367018 60287388 ~ 60290567 (+) True G281141

Expression Profile