RNA id: TU313041


Basic Information

Item Value
RNA id TU313041
length 214
lncRNA type intronic
GC content 0.44
exon number 1
gene id G275722
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56219643 ~ 56219856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcgacatccacgtcttcggaaGTACTCGTGATGAGGTCTATTcaaagctggtctgaccaatcggaatccatgcttcaagattgttttgatcacgcggactgggatatgttccaggtagcctctgagagtaacattgatgtatacggtGACTAAGTTTCTTCAGGAAGTGTATGGGAGaagttgtacccactgtgacaatTAAAACCTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313039 lncRNA upstream 1267 56217653 ~ 56218376 (+) True G275720
TU313038 lncRNA upstream 2100 56217318 ~ 56217543 (+) True G275719
TU313035 lncRNA upstream 6254 56213155 ~ 56213389 (+) True G275716
TU312988 lncRNA upstream 44412 56140254 ~ 56175231 (+) True LOC110504343
TU312909 lncRNA upstream 208355 56008439 ~ 56011288 (+) True G275598
TU312987 lncRNA downstream 72993 56292849 ~ 56295217 (+) True G275673
TU313100 lncRNA downstream 88451 56308307 ~ 56309663 (+) True G275776
TU313174 lncRNA downstream 204157 56424013 ~ 56424916 (+) True G275846
TU313191 lncRNA downstream 227740 56447596 ~ 56447865 (+) True G275860
TU313194 lncRNA downstream 232021 56451877 ~ 56452654 (+) True G275863
XM_021584527.1 mRNA upstream 128668 56087619 ~ 56090975 (+) True LOC110505342
XM_021583112.1 mRNA upstream 134981 56083841 ~ 56084662 (+) True LOC110504333
XM_021584518.2 mRNA upstream 140347 56077184 ~ 56079296 (+) True LOC110505333
XM_021584505.2 mRNA upstream 156670 56062335 ~ 56062973 (+) True LOC110505326
XR_005039901.1 mRNA upstream 188566 56028104 ~ 56031077 (+) True LOC118944547
XM_021597432.2 mRNA downstream 83570 56303426 ~ 56320718 (+) False etv5a
XM_021597433.2 mRNA downstream 83570 56303426 ~ 56320718 (+) True etv5a
XM_036974690.1 mRNA downstream 105146 56325002 ~ 56329352 (+) False LOC118936648
XM_036974694.1 mRNA downstream 105158 56325014 ~ 56329352 (+) False LOC118936648
XM_036974678.1 mRNA downstream 105162 56325018 ~ 56329352 (+) False LOC118936648
TU312833 other upstream 303510 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 303510 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 303510 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 318900 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 844117 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 1044711 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1569878 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 3832860 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 3832860 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 4067532 60287388 ~ 60290567 (+) True G281141

Expression Profile