RNA id: TU314270


Basic Information

Item Value
RNA id TU314270
length 204
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G276826
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56448177 ~ 56448380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatatacattgtgtgcaaaagacatgaggaggtaggcaataaataggccacaggagtgaataattacaatttagcagattaacactggagtgataaatgatcagatgaacacgtgcaggtagagatactggtgtgcaaaagagcagaaaagtaaataaaataaaaacagtatggggatgaggtaggtaaattgggtgggctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314155 lncRNA downstream 86737 56272351 ~ 56361440 (-) True G276722
TU314105 lncRNA downstream 230724 56217238 ~ 56217453 (-) True G276689
TU314090 lncRNA downstream 247763 56200173 ~ 56200414 (-) True G276675
TU314078 lncRNA downstream 261815 56186152 ~ 56186362 (-) True G276664
TU314075 lncRNA downstream 267030 56180758 ~ 56181147 (-) True G276661
TU314273 lncRNA upstream 4623 56453003 ~ 56461796 (-) True G276829
TU314283 lncRNA upstream 20532 56468912 ~ 56469711 (-) True G276835
TU314290 lncRNA upstream 31879 56480259 ~ 56480482 (-) True G276840
TU314293 lncRNA upstream 35049 56483429 ~ 56483715 (-) True G276843
TU314294 lncRNA upstream 35995 56484375 ~ 56485672 (-) True G276844
XM_021597431.2 mRNA downstream 399032 56047811 ~ 56049145 (-) True LOC110520254
XM_021597429.2 mRNA downstream 406479 56040760 ~ 56041698 (-) True LOC110520253
XM_021597426.2 mRNA downstream 429805 56017260 ~ 56018372 (-) True LOC118936311
XM_021597427.1 mRNA downstream 443392 56003832 ~ 56004785 (-) True LOC110520252
XM_036964483.1 mRNA downstream 448616 55997768 ~ 55999561 (-) True LOC110505323
XM_036974697.1 mRNA upstream 46771 56495151 ~ 56578648 (-) False LOC110520260
XM_036974696.1 mRNA upstream 46771 56495151 ~ 56578650 (-) False LOC110520260
XM_036974698.1 mRNA upstream 46771 56495151 ~ 56578650 (-) False LOC110520260
XM_036974701.1 mRNA upstream 46771 56495151 ~ 56578650 (-) False LOC110520260
XM_036974702.1 mRNA upstream 46771 56495151 ~ 56578650 (-) False LOC110520260
TU312498 other downstream 1036690 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1036690 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1328965 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1765372 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3197093 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 822402 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 954604 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1136006 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6266195 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8521169 64969549 ~ 64970755 (-) True G286522

Expression Profile