RNA id: TU314649



Basic Information


Item Value
RNA id TU314649
length 243
lncRNA type intronic
GC content 0.46
exon number 2
gene id G277168
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57053985 ~ 57054282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aacacagaggcagagtgttgttgtcctgggactGTCTCCTGCAGACTGATTTAATAACAAAGAGGcagagtgttgttgtcctggggctgTCTCCTGCAGACTGATTTAATAACACAGAGgcagagtgttgttgtcctgggactCTCTCCTGCAGACTGATTTAATAACAAAGAGGcagagtgttgttgtcctgggactGTCTCCTGCAGACTGATTTAATAACAAAGAGGTagagtgttgttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU314588 lncRNA downstream 7130 56968036 ~ 57046855 (-) True G277110
TU314475 lncRNA downstream 151710 56867210 ~ 56902275 (-) True LOC110520270
TU314446 lncRNA downstream 234093 56818645 ~ 56819892 (-) True G276969
TU314381 lncRNA downstream 381393 56671494 ~ 56672592 (-) True G276907
TU314294 lncRNA downstream 568313 56484375 ~ 56485672 (-) True G276844
TU314730 lncRNA upstream 134382 57188664 ~ 57189944 (-) True G277245
TU314744 lncRNA upstream 154651 57208933 ~ 57209198 (-) True G277259
TU315082 lncRNA upstream 166305 57220587 ~ 57222617 (-) True G277576
TU315112 lncRNA upstream 212654 57266936 ~ 57267196 (-) True G277604
TU315093 lncRNA upstream 278286 57332568 ~ 57335897 (-) True LOC118963713
XM_036974745.1 mRNA downstream 136572 56867209 ~ 56917413 (-) False LOC110520270
XM_021597452.2 mRNA downstream 209332 56832398 ~ 56844653 (-) True LOC110520269
XM_036974743.1 mRNA downstream 210174 56832398 ~ 56843811 (-) False LOC110520269
XM_021597448.2 mRNA downstream 386394 56652369 ~ 56667591 (-) True LOC110520265
XM_021597446.2 mRNA downstream 403032 56600804 ~ 56650953 (-) True LOC110520263
XM_021597462.2 mRNA upstream 89153 57143435 ~ 57206958 (-) True slc49a4
XM_021597463.2 mRNA upstream 178351 57232633 ~ 57260239 (-) True LOC110520276
XM_021597464.2 mRNA upstream 218191 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597465.2 mRNA upstream 266956 57321238 ~ 57330396 (-) True LOC110520278
XR_005050883.1 mRNA upstream 278336 57332618 ~ 57336298 (-) False LOC118963713
TU312498 other downstream 1642498 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1642498 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1934773 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2371180 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3802901 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 216500 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 348702 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 530104 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5660293 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7915267 64969549 ~ 64970755 (-) True G286522

Expression Profile