RNA id: TU313632


Basic Information

Item Value
RNA id TU313632
length 4366
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G276240
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57140946 ~ 57145348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gCTGCTTAAAATCTCACATACATTTGATTTTGTTTTCACAGGACAATAACATCTATACCCCCCAAACACATGATAAGCAGTGTAATAGGAACGAGTTTCACTACTGTACACATACGGACTACCTCATCATCACAGAGTGGGTGGAGAGGACAGAAATCACAGGGAATTAAGGCAACATGTCACAAGGTTCTGAAGGTAAAGAGCATGAAGACAGTGTTCTATCACTGGGTCGATCCACGAAGAGTGTCTTTggcatccctttgatattttaagtagaaattgtgcatcAATATTGGATTTCAAAAGCCTGTtttattaaatgaagtgccctttaaccTAGACCACATGTAGAATTGAATCCATCTGAATGAATAAATAAAGTGCCAAAaatcagcattttgacatgtccctctgtctaccttctgtgacttctaggaagatgttttttaacccacttaatcccCACAAGTtctcaccatcattgtaaagccctagttattttgctgctttgacaaagtcatttctgaagatgattatttattttgtgtgattagtgattcatttacatcTGTCCCTCACTCtaaaggtcaaccctgttacgtgaactgaactctcattgTAATATGGTGAAACTCTtccttttaaatatttttttcaaaagaAACCATAAACATCTAATAGCCAAATCATAGCGTAAAAGCAGGTGAGATGGTTCTACTCTGAGCGGATCAAGCATAACATGTCAACCCGGTTACCCAtacatagacaggctagaaatatattttttattttacctattGAGCTgggaaaatgtgttttaatgaactGAACATGTGCtctgacagaatgttaaaatgaggtgaaattcCTTTTTCTTTTAACAGTTGTCAAAAGGCACcaaattggtggaacgaccccaAGGGGTAAAGAGAACTTACTGTACAAGGTGAGAGGAAAAGACAAGCGCCATTCAGAACATACAGTtaaagtgggaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccacgccccaaatttcttgttaaacaaactatagttttggcatgtcggttaggacatctaatttgtgcgtgacaagtcatttttccaacaattgtttacagacagattcaaAATACAGACCTTTTCAaaatatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcatttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctggtaggctaattgacataatttgagttaattggaggtgtacctgtggatgtatttcaaggcataccttcaaactcagtgcctctttgctagacatcatgggaaaatcaaatgaaatcagtcaagacctcagaaaataaattgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtaccatgttcatctgcacaaacaatagtacgcaagtataaacaccatgggaccacgcagccatcataccgatCAGGATgtagaagcgttctgtctcctagagatgaacgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggcccttgtgaagatgctggttgaaacaggtacaaaagtatctatatccacagtaaaacaagtcctatatcgacataacctgaaaggctgctcagcaaggacgaagcaactgctccaaaaccgccataaaaaaagccagattacggtttcaactgcacatggggacaaagggagtactttttggagaaatgtcctctggtctgacgaaacaaaaatataattgtttggccacaatgaccatcattatgtttggaggaaaaagggggaagcttgcaagccgaagaacaccatcccaactgtgaagcacgggggtggcagcatcatgttgtgagggtaatttgctgcaggagggactggtgtacttcacaaaatagatggcatcatgagaagggaaattaggtggatatattgaagcaacatctcaagacatgagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcaaacttccaaagttgtggcaaaatgtcttaaggactacaaagtcaaggtattggagtggccatcacaaacctcTGACCAATCCCatagataatttgtgggcagaactgaaaaagtgtgttcgagcaaggaggcctgcaaacctgactcagttacaccagctttgtcaggaggaatgggccaaaattcacccaatttattgtgggaagcttgtggaaggctacccaaaacatttgaccctagttaaacaatttaaagggaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatggaagaaataaaagctggaataaatcattctctctactattattctgacattcttaaaataaagtgatgatcctaactgacctaagacagggaattcttactaggattaaatgttaggaattgtggaaaaatgagtttaaatgtatttggctaaggtgtaaacctccgacttcaactgtacatactataTACCGTATCACCCAGGAAAAACATTTTCTGTGGTTTGTCTGTGGCACAGCCGAGTAATGGGAGTTGGTGAGTGGTTTTGGCATGTTGAAAAAATAAGTTCCCAGTTAAAGTCCCTTGTAGATTAGTGCCTTTCAGGACCAGTCACTCCACAATCTGGACAAAGGTGGTTCTTTCCCGTTCCCCTCTTTTTCATGTTGAACATCAGTTCAACATGTGTTATTTCTCCGTGGGAAAGTAAGCATCCCCTCCAAGTCCAATCCTGACCGTCCAGACAAGGAGGTGCTTACCGAACCACTACCTGCCTCTTGTTGTCAGTGTCCTCAGCACAGTGACTACTGCTGGTGAACGCTGTGCGTTAGATGTAGAGCAGCTTCGTGGTGACTTAATAGTTTGTGGTTTCCACAGAATCAGCCACAGTCTCAGCTGTGCAACAGCGGTATTCACATATTTCATGACAGTCTTTGTATTTGTCTCTGTATCTACTGTGTTAGTGTTCTGATCCCTCTGTAATAATAATGGACATTTCTACTGAGAAATATTTCATGttaaaaccatttaaaaaaaacatgcctTTCTCACTGAAACAAGTTTAGTTCAAAATTCAAAAATCTCCTATATAGTATAACAAACTgtaaacagcaacaacaaaaaacatttgaccATTTTGAAATGTTCGTCTGCATATTAACCAACTCCAAACCAAAATATCTGACTCCCGTTGTCAGCTGAAAGGTCAGAATGACACGGGGAAACTACTACGTCCAACGTCCATATTCTGAACTGCTCATTAAAACGGACTGTGTGGTAACATCATGAGACCCGCGCAGCAGAGCctcgacacacacagagaggagagttttAAAGCAGTGACTTTGCATGCAGAGCGAGGCGGTCTCTGCGGCTCATCCAATCATATCCCAAGACACTGGCGTGCACCAGGGTGGTGTCCAATCATAGTCGACGACACTGGCAGGAACCTGCACGGCCTGCAATCAATTCAATCCCATAGGGAGAAAAAATGTCTTGCATAAGTcttgagagagggggatatagtaAAAAAAGGAGACCATATGTCACTATTAAAAGACATGTAATATCACAGGTAATTCAACAGAACAGCTTAGTTTGACAGTTTTAGCCCCCTGCAATTCATAACCAGCAGTTATGAGTGACACTAAAATGCTATACGGTCCCTTGTTAGCACAGATTGGTGGGGCTTGCTGATTGGCTGCTAGAGCTACTCAGCCAACAGGCCACAGGGAAACCACCTGCCACAGAGTGCATCTTTAAACAAACAACAGTCCCTCATCATACCATGACCAGGTCCCACTGTAGTTTACATTATAAAAAAGACAAGACAATGCTGCATCAGAGGACCAACTGGCCAAACCGACACTTATAAAGACTTAACATGAATTACTAATTGTCTGAGGCCCTTGGCTGGCGCTTCTCATTGGCTACAAGGAAATCACAATGAATCACCGACCACCGTCATATTACAAGTTTACACCTACAGCTATACTTAAAACGTAAAAGAGCGCAAGTTGCACTTCTGAAATCCatttttcttcctcttcttctttgtgCAGTGCGTTTCAAATGTTCCTGTCTTTTTTCTCCTCGTGTTCCAGTCTttttgtgtgtgtcagactgaGACAAAGACGTCTAGGTAGAGGCGGTCGTAGGATTCCctgaagaagaggatgaggacGAGGCTGAAGGCACAGGAGCCCGTCAAACACCAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313592 lncRNA upstream 32067 57014335 ~ 57108879 (+) True G276200
TU313543 lncRNA upstream 113663 56946153 ~ 57027283 (+) True G276151
TU313518 lncRNA upstream 138982 56918771 ~ 57001964 (+) True sema5ba
TU313520 lncRNA upstream 139502 56918705 ~ 57001444 (+) False sema5ba
TU313511 lncRNA upstream 139637 56918771 ~ 57001309 (+) False sema5ba
TU314755 lncRNA downstream 75214 57220562 ~ 57222649 (+) False LOC110520274
TU314756 lncRNA downstream 77338 57222686 ~ 57226116 (+) True LOC110520274
TU314761 lncRNA downstream 87317 57232665 ~ 57233877 (+) True G277276
TU314765 lncRNA downstream 94723 57240071 ~ 57245276 (+) False G277279
TU314766 lncRNA downstream 95547 57240895 ~ 57245169 (+) True G277279
XM_021597455.2 mRNA upstream 35429 56917452 ~ 57105517 (+) False sema5ba
XM_021597456.2 mRNA upstream 35429 56917452 ~ 57105517 (+) False sema5ba
XM_021597461.2 mRNA upstream 35429 56917452 ~ 57105517 (+) False sema5ba
XM_036974744.1 mRNA upstream 35429 56917452 ~ 57105517 (+) False sema5ba
XR_005050753.1 mRNA upstream 35429 56917452 ~ 57105517 (+) False sema5ba
LOC110520274 mRNA downstream 76299 57221647 ~ 57230455 (+) False LOC110520274
XM_021597468.2 mRNA downstream 189689 57335037 ~ 57405623 (+) False LOC110520279
XM_021597467.2 mRNA downstream 213527 57358875 ~ 57405623 (+) False LOC110520279
LOC110520280 mRNA downstream 282077 57427425 ~ 57435274 (+) True LOC110520280
XR_005051426.1 mRNA downstream 285220 57430568 ~ 57430693 (+) True LOC118964378
TU312833 other upstream 1224813 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1224813 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1224813 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1240203 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 1765420 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 119219 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 644386 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2907368 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2907368 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 3142040 60287388 ~ 60290567 (+) True G281141

Expression Profile