RNA id: TU314786



Basic Information


Item Value
RNA id TU314786
length 326
RNA type TUCP
GC content 0.47
exon number 1
gene id G277296
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57264567 ~ 57264892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtctcggtgtgtttccaagggtatggaagtcggccataataatggccatctttaaatcaggtgaccctgctgacgtgagtaactacaggcccattagtatactacctgtggtgtcaaaggttgttgaaaagtgtgtagcagaacaactgattgcccacctcaacaacagccccttcacattacactccatgcagtttggcttcagagcgaaacactccacagaaactgccaactgctttcttctggaaaatgtgaagtccaagatggacaaagggggtgctgttggggctatgtttctggacctaaggaaggcttttgatactgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU314785 lncRNA upstream 148 57264106 ~ 57264419 (+) True G277295
TU314783 lncRNA upstream 2480 57261788 ~ 57262087 (+) True G277293
TU314773 lncRNA upstream 4142 57247534 ~ 57260425 (+) True G277285
TU314765 lncRNA upstream 19291 57240071 ~ 57245276 (+) False G277279
TU314766 lncRNA upstream 19398 57240895 ~ 57245169 (+) True G277279
TU314793 lncRNA downstream 13057 57277949 ~ 57278588 (+) False G277302
TU314794 lncRNA downstream 13057 57277949 ~ 57297919 (+) True G277302
TU314823 lncRNA downstream 56451 57321343 ~ 57322819 (+) True G277331
TU314829 lncRNA downstream 66941 57331833 ~ 57332100 (+) True G277337
TU314841 lncRNA downstream 72662 57337554 ~ 57337847 (+) True G277349
LOC110520274 mRNA upstream 34112 57221647 ~ 57230455 (+) False LOC110520274
XM_021597455.2 mRNA upstream 159050 56917452 ~ 57105517 (+) False sema5ba
XM_021597456.2 mRNA upstream 159050 56917452 ~ 57105517 (+) False sema5ba
XM_021597461.2 mRNA upstream 159050 56917452 ~ 57105517 (+) False sema5ba
XM_036974744.1 mRNA upstream 159050 56917452 ~ 57105517 (+) False sema5ba
XM_021597468.2 mRNA downstream 70145 57335037 ~ 57405623 (+) False LOC110520279
XM_021597467.2 mRNA downstream 93983 57358875 ~ 57405623 (+) False LOC110520279
LOC110520280 mRNA downstream 162533 57427425 ~ 57435274 (+) True LOC110520280
XR_005051426.1 mRNA downstream 165676 57430568 ~ 57430693 (+) True LOC118964378
XR_005051427.1 mRNA downstream 169253 57434145 ~ 57434270 (+) True LOC118936397
TU312833 other upstream 1348434 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1348434 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1348434 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1363824 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 1889041 55374546 ~ 55375526 (+) True LOC110520231
TU315509 other downstream 524842 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2787824 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2787824 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 3022496 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 3475347 60740239 ~ 60757350 (+) True G281591

Expression Profile