RNA id: TCONS_00029430


Basic Information

Item Value
RNA id TCONS_00029430
length 1345
RNA type mRNA
GC content 0.42
exon number 8
gene id XLOC_014917
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33258572 ~ 33275035 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGCAGAATAGCATTAGCACATAACAGTCTTTCTGCTTTATTAAAGcttgaatttatatattttataagtagCTATCGGTTGCGAGTAATGATGAGCCGCACTCCCGATGCAAGAGCGAGAGATACCCAGACCAAGCAGATCCAGGAGAATATCACCAGTGTGGAAAAACACTTCGGAGATCTTTGCCAACTGTTTGCTGCCTATGTCCGTAAAACTGCACGGCTACGAGATAAAGCAGATCTCCTGGTCAAGGAAATCAACGTTTATGCTGACACCGAGACACCAAACTTAAAATGTGGACTCAAGAATTTTGCAGATCAACTAGCCAAAGTTCAAGACTACCGGCAAGCAGAGGTGGAGAGGCTGGAAGTGAAAGTTATAGAGCCTTTGAAAGCATATGGGAATATTGTCAAAACAAAAAGGGAGGACCTGAAGCAGACCCAGAGTGCAAGGAACAGAGAGGCCAAGCAGATGCAGCAGCTGGAAAGAATGAGGCAGAGAAACCCCTCTGACAGACAGATCATTTCACGAAAGGCTGAGAGTGAACTCCAGAGAGCCACAATGGACGCCACACGCACGACTCGCCAGCTTGAGGAGACAATAGATGACTTTGAAAAGCAGAAGATTCGTGATATTAAGAAAGTTTTGGGTGAATTCGTGACGGTGGAGATGGCGTTCCATGCCAAGGCTTTGGAAATTTACACCACAGCTTACCAGCACATTCAGAATGTAGATGAGGAAGGAGACCTTGAGGTATTCAGGAATTCACTGCATCCTCCTGATTACCAGTCACGTTTAGAAATCGTTCGTGCAAATTCTAAACTGTCCCTGAATCGAACTGGTACATCAATGAGTAAATCAGGAACAATGCAGTCAAGAACATCAAGCAGACAGAGGAAAAGGGATGACGAAGAAGATGAGgaggaagatgatgaagatgaggacGATTTGGAGGAAGTGACTGATGATGAGCATTGAAGTCGAATATCCTCAACATTTTCACACAGCGACATTCCTGGACTGCACAGTGTTTTTAATAGAGATGAATGATATCAAATTAATTTGCATCACAGGTAATAAATGTAATGGTAGCTGAGCAATGTTAGCTTAAGATAAGTGCGTTGTATATGTGTTTGCTCACTTCTAAATCATATACCATGAAATTATACAGATTTACATCTTCAAACAGAGTTTTCTATTCAATTTTATTAACAAAGTTTGTGTACGAAGTGCCAAGCAGTTTCCTTGTTTAGTATGACGTTTATTTAGAAGGTGCCTTAGAGAGTGTTGGTGTACCAAATAAAACTGGCGCTTGCTTTTGCATAACAGGCAGTTTTTTCATG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006611 protein export from nucleus biological_process
GO:0031503 protein-containing complex localization biological_process
GO:0001731 formation of translation preinitiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0000054 ribosomal subunit export from nucleus biological_process
GO:0051168 nuclear export biological_process
GO:0034470 ncRNA processing biological_process
GO:0051169 nuclear transport biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0006405 RNA export from nucleus biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0033750 ribosome localization biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0071166 ribonucleoprotein complex localization biological_process
GO:0071426 ribonucleoprotein complex export from nucleus biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0071428 rRNA-containing ribonucleoprotein complex export from nucleus biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030689 Noc complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000020301

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029413 lncRNA downstream 626434 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029371 lncRNA downstream 2292911 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 2423475 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 2536068 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 2634840 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030295 lncRNA upstream 507805 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 913214 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 1006908 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00030298 lncRNA upstream 1385734 34660712 ~ 34674853 (-) False XLOC_014929
TCONS_00030299 lncRNA upstream 1385734 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00029428 mRNA downstream 46549 33200266 ~ 33212023 (-) True XLOC_014916
TCONS_00029427 mRNA downstream 171326 33084066 ~ 33087246 (-) True XLOC_014915
TCONS_00029424 mRNA downstream 314522 32930476 ~ 32944050 (-) False XLOC_014914
TCONS_00029425 mRNA downstream 318532 32930479 ~ 32940040 (-) False XLOC_014914
TCONS_00029426 mRNA downstream 320990 32933764 ~ 32937582 (-) True XLOC_014914
TCONS_00029433 mRNA upstream 93174 33368152 ~ 33370271 (-) True XLOC_014918
TCONS_00029435 mRNA upstream 553998 33828976 ~ 33835396 (-) False XLOC_014921
TCONS_00029438 mRNA upstream 561461 33836439 ~ 33850201 (-) False XLOC_014922
TCONS_00029440 mRNA upstream 612611 33887589 ~ 34011340 (-) False XLOC_014923
TCONS_00029442 mRNA upstream 613570 33888548 ~ 34063567 (-) False XLOC_014923
TCONS_00029414 other downstream 608791 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029412 other downstream 632693 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029400 other downstream 927942 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 1108461 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029389 other downstream 1674171 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029434 other upstream 97386 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 556391 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 558542 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029439 other upstream 572156 33847134 ~ 33850219 (-) True XLOC_014922
TCONS_00029443 other upstream 613626 33888604 ~ 33915864 (-) False XLOC_014923

Expression Profile

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