RNA id: TU315162


Basic Information

Item Value
RNA id TU315162
length 380
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G277653
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57359148 ~ 57359527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTACTGATGCAGAAGTCTGACTGTCTCACATTCAGATTGCTCacaaaaaagtattattattttttactacaTAATGAGTACACACAATCATTCCTCAAGTCATTAACCATGACAGAGTATTCAGCAAAATGCCCTTTCACAAAATGCCCATTTATCAGCAACAACTGTCATCAGTTTTCTCTCCAGTCCTTTTCCCATGAAAGAGAAAAATACTACACAACAAAATTGTAAACATGCATAAAACATGAGAGACATGACGCTATGCAGACCCACCTTTGTTGTAAGTGCGTGTAGCCGTCCCTATCAGCTCAGTTTAGTACAGCAGGTAGGCAGacaccctctcctctgctctctcctctagcagcgtatgtgtatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315158 lncRNA downstream 7539 57351381 ~ 57351609 (-) True G277649
TU315157 lncRNA downstream 8367 57350395 ~ 57350781 (-) True G277648
TU315156 lncRNA downstream 9333 57349572 ~ 57349815 (-) True G277647
TU315093 lncRNA downstream 23251 57332568 ~ 57335897 (-) True LOC118963713
TU315112 lncRNA downstream 91952 57266936 ~ 57267196 (-) True G277604
TU315165 lncRNA upstream 7219 57366746 ~ 57366955 (-) True G277656
TU315169 lncRNA upstream 15321 57374848 ~ 57375092 (-) True G277660
TU315170 lncRNA upstream 19540 57379067 ~ 57379291 (-) True G277661
TU315171 lncRNA upstream 21384 57380911 ~ 57382761 (-) False G277662
TU315176 lncRNA upstream 21384 57380911 ~ 57382699 (-) True G277662
XR_005050883.1 mRNA downstream 22850 57332618 ~ 57336298 (-) False LOC118963713
XM_021597465.2 mRNA downstream 28752 57321238 ~ 57330396 (-) True LOC110520278
XM_021597464.2 mRNA downstream 67621 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597463.2 mRNA downstream 98909 57232633 ~ 57260239 (-) True LOC110520276
XM_021597462.2 mRNA downstream 152190 57143435 ~ 57206958 (-) True slc49a4
XM_036964539.1 mRNA upstream 50454 57409981 ~ 57414314 (-) True LOC110505369
XM_036974749.1 mRNA upstream 56555 57416082 ~ 57426715 (-) False LOC110520281
XM_036974747.1 mRNA upstream 56555 57416082 ~ 57427276 (-) False LOC110520281
XM_036974748.1 mRNA upstream 56555 57416082 ~ 57427276 (-) False LOC110520281
XM_036974746.1 mRNA upstream 56555 57416082 ~ 57427344 (-) True LOC110520281
TU315090 other downstream 61386 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 1947661 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1947661 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2239936 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2676343 54679918 ~ 54682805 (-) True G274344
TU315188 other upstream 43457 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 224859 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5355048 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7610022 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7654732 65014259 ~ 65029736 (-) True G286580

Expression Profile