RNA id: TU314862


Basic Information

Item Value
RNA id TU314862
length 202
lncRNA type intronic
GC content 0.47
exon number 1
gene id G277370
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57361982 ~ 57362183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACAGCAGCTCCATATccctactgtgctctgctgtgctgGGTCTGTCTGAATGATAGTGATTGTAGAGCTGTGAGGAGTGATAGACAGCTATGTGTTCATCACACCAgcatgagtgagagagaaagaaagagacagagagagagagaggagagagagagagttataccctttacagacagactgtacagtatgttgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314859 lncRNA upstream 2087 57359661 ~ 57359895 (+) True G277367
TU314837 lncRNA upstream 2514 57359170 ~ 57359468 (+) False LOC110520279
TU314854 lncRNA upstream 11206 57350161 ~ 57350776 (+) True G277362
TU314853 lncRNA upstream 13053 57348722 ~ 57348929 (+) True G277361
TU314852 lncRNA upstream 14093 57347677 ~ 57347889 (+) True G277360
TU314865 lncRNA downstream 2714 57364897 ~ 57365098 (+) True G277373
TU314874 lncRNA downstream 21788 57383971 ~ 57384195 (+) True G277382
TU314879 lncRNA downstream 27721 57389904 ~ 57390158 (+) True G277387
TU314885 lncRNA downstream 33234 57395417 ~ 57395645 (+) True G277393
TU314886 lncRNA downstream 33674 57395857 ~ 57396066 (+) True G277394
LOC110520274 mRNA upstream 131527 57221647 ~ 57230455 (+) False LOC110520274
XM_021597461.2 mRNA upstream 256465 56917452 ~ 57105517 (+) False sema5ba
LOC110520280 mRNA downstream 65242 57427425 ~ 57435274 (+) True LOC110520280
XR_005051426.1 mRNA downstream 68385 57430568 ~ 57430693 (+) True LOC118964378
XR_005051427.1 mRNA downstream 71962 57434145 ~ 57434270 (+) True LOC118936397
XM_036974759.1 mRNA downstream 83960 57446143 ~ 57551182 (+) False clasp1a
XM_036974753.1 mRNA downstream 83961 57446144 ~ 57551182 (+) False clasp1a
TU314786 other upstream 97090 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 1445849 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1445849 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1445849 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1461239 55900194 ~ 55900743 (+) True G275542
TU315509 other downstream 427551 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2690533 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2690533 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 2925205 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 3378056 60740239 ~ 60757350 (+) True G281591

Expression Profile