RNA id: TU315171


Basic Information

Item Value
RNA id TU315171
length 1851
lncRNA type antisense_over
GC content 0.61
exon number 1
gene id G277662
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57380911 ~ 57382761 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATCCGATAAAGCCATCCTTCATCTTGTAGATCTTGGCTCCGTAGCTGGAGAGGTCAGTCCTGTCCAGGAGCAGGGCTGGGCAGCAGCTGGAGGGGCCCTCAGCACTCTCCCTgcgtggaggagggaaggggactAAGGAGGCCCCCGGCACACTGATCTCCACACTGGGGCTGCTGACTTGGGCCTGGGCATGGTCCATGGTCCCCTCCCCCTGCGTCTGActggagggctggaggggagAGCGGGGAGTAGGGCCGGTACATATAGCCATGGTAGAGACTGTGGTATGAATGCTGGTTGTTGGCTGGGGAGTGGGTCCGGTAAAGATGAGAGTGGCTGAGTTAGTAGCACTGGCTGTGGGAGCTGGCGCAACCTCTGCTCTTAAGTCTGGATGACAGGGTGGTGGAGCCCCAGGGGAGCTGTCACTCTGCCTGGCCTCTCCACTGCTTGTCCCCTCACAGCTCCCCATCTCTTCTATCTCTCCACTGCCTATCCTctcactgctctccctctcctcctccttcagtcCCACAGTGGGAGACTGAGAGTCTCTGCTTCCCAATAGAGTCTTACAGTCTCTGCCCGTCCCTGGGGTCTGACTGCCAGTACCAGGCTCTGGCTGTTGGTCTATTGAAGCTGTTACTGTAGTGACATTACCCTGGCTCTCTGTCtgcccaccctctccctctctctgcctcattCTCTTAAACTCCTCAAAGGTGGGGATGTGCAGGCGGCCCATGGGGGGTTTCTTGCGTTCGGCTATTATCTCTGCACAACTCCCAGCGACAGAGATGGACTCGGTGGTGTAGGACTTGGTCATGTCCGGGGTCTGAGGAGTCTCAGGGGAGGTGTGGAGGGTCAGGTTTGGGGTGCTGTTCTGCCGGCGGAGCTGCAGGCGTCTCAGAACCTCTTTCTTGATTTCCTCAGGGCTGGTGATGCGCCGGACACACAGGGGTTTCCCAACGTACCCCTGGTAGGGCGATGAGTCCCTCTCTGAGCACCCCCCGAGGATGGGAGTGGTACTGCCTGGGGTTATCTGCGGTCGAAGAGGCTTTAGGGGTTCTGCTGCTGCCCGGGCACTCTGGAGGCGGAGCTTCTCCCTTAACCCCTTCCTGGCGGTGGTGGTAGCATTCACCCCCCAGTCATCCACGCCGGGGAACAGCCATTGGGGGAAGAGGGGCAGCTCCTTCCTCCCCAGACCCCCCAGACGAGCATTGGGGTAGAAGGCAAGGGTCTCAGGACTGTAGCCCTGGGGCCCTGTCCCCACCGGGGGCCCATCGTACCAGTGGCTGGTGGCAGTGCAGCGGAAGATGAACTCACTGTCCATGCTGCCCCTGTGGGGGGCGCTATAGGGGGAGGAGTAGAGGCCTGGTTCAGACACAGAATTACTCCAGTTCAGGTTCTCCATGCTGCGGTAGAGTCTAGTCCCGCTGTCTGGGTTAATGTTCACACAGGGCCCTGCGTGGTCTGGCTCCaggcctaaccctgaccctgaccctaaccccagcccAGAGTCAGGCCCCCTGGGTGGGTGCTGCACACTGTTGGTGGAGCAGTAACGAAGGCCAAGATTAGTCAACAGGGCACTGCTGTTACACCGGGGCATGACGGGGCACTGGCCTGGGTAAGGAGGGTAGGGGGGTACGCTGTGGCCTCTGAAGCCAGAAAGGGGTTGGGGAAGGGGCAGGTCAGTGAGGCTGAGGCAGGGCTCCAGGTCCATGGTGAGACCAGCGGTGCAGGTGTAGCCCGCAGGGCCGTGGCTGGGGGAGCAGCCCGCTGAGGGGTAATCACATGGCGGAGGGGCCTTCACGTCCGGCATGGCTGCAGTATGAGCCACCATACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315170 lncRNA downstream 1620 57379067 ~ 57379291 (-) True G277661
TU315169 lncRNA downstream 5819 57374848 ~ 57375092 (-) True G277660
TU315165 lncRNA downstream 13956 57366746 ~ 57366955 (-) True G277656
TU315162 lncRNA downstream 21384 57359148 ~ 57359527 (-) True G277653
TU315158 lncRNA downstream 29302 57351381 ~ 57351609 (-) True G277649
TU315181 lncRNA upstream 8174 57390935 ~ 57391169 (-) True G277666
TU315186 lncRNA upstream 14224 57396985 ~ 57397377 (-) True G277671
TU315190 lncRNA upstream 18138 57400899 ~ 57401109 (-) True G277675
TU315191 lncRNA upstream 21467 57404228 ~ 57404457 (-) True G277676
TU315151 lncRNA upstream 53945 57436706 ~ 57436977 (-) True G277642
XR_005050883.1 mRNA downstream 44613 57332618 ~ 57336298 (-) False LOC118963713
XM_021597465.2 mRNA downstream 50515 57321238 ~ 57330396 (-) True LOC110520278
XM_021597464.2 mRNA downstream 89384 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597463.2 mRNA downstream 120672 57232633 ~ 57260239 (-) True LOC110520276
XM_021597462.2 mRNA downstream 173953 57143435 ~ 57206958 (-) True slc49a4
XM_036964539.1 mRNA upstream 27220 57409981 ~ 57414314 (-) True LOC110505369
XM_036974749.1 mRNA upstream 33321 57416082 ~ 57426715 (-) False LOC110520281
XM_036974747.1 mRNA upstream 33321 57416082 ~ 57427276 (-) False LOC110520281
XM_036974748.1 mRNA upstream 33321 57416082 ~ 57427276 (-) False LOC110520281
XM_036974746.1 mRNA upstream 33321 57416082 ~ 57427344 (-) True LOC110520281
TU315090 other downstream 83149 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 1969424 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1969424 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2261699 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2698106 54679918 ~ 54682805 (-) True G274344
TU315188 other upstream 20223 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 201625 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5331814 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7586788 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7631498 65014259 ~ 65029736 (-) True G286580

Expression Profile