RNA id: TU314885


Basic Information

Item Value
RNA id TU314885
length 229
lncRNA type intronic
GC content 0.52
exon number 1
gene id G277393
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57395417 ~ 57395645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaagtctctgtatgtccttgggtgtcccagccagagcccggacttgaatttCCGAccgaacatccctggagagacctgaaaacacctgtgcagcaacgctccccatccaacctgacagagcttgagaggatctgcagagatgaatgggagaaactccccaaatacatgtgtgccaagattgtagcgtcatatccaagaagacgtGAGGCtggaatcgctgccaaagg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314879 lncRNA upstream 5259 57389904 ~ 57390158 (+) True G277387
TU314874 lncRNA upstream 11222 57383971 ~ 57384195 (+) True G277382
TU314865 lncRNA upstream 30319 57364897 ~ 57365098 (+) True G277373
TU314862 lncRNA upstream 33234 57361982 ~ 57362183 (+) True G277370
TU314859 lncRNA upstream 35522 57359661 ~ 57359895 (+) True G277367
TU314886 lncRNA downstream 212 57395857 ~ 57396066 (+) True G277394
TU314835 lncRNA downstream 2106 57397751 ~ 57399581 (+) True LOC110520279
TU314889 lncRNA downstream 4616 57400261 ~ 57400556 (+) True G277397
TU314838 lncRNA downstream 14262 57409907 ~ 57410139 (+) True G277346
TU314892 lncRNA downstream 15528 57411173 ~ 57411475 (+) True G277400
LOC110520274 mRNA upstream 164962 57221647 ~ 57230455 (+) False LOC110520274
XM_021597461.2 mRNA upstream 289900 56917452 ~ 57105517 (+) False sema5ba
LOC110520280 mRNA downstream 31780 57427425 ~ 57435274 (+) True LOC110520280
XR_005051426.1 mRNA downstream 34923 57430568 ~ 57430693 (+) True LOC118964378
XR_005051427.1 mRNA downstream 38500 57434145 ~ 57434270 (+) True LOC118936397
XM_036974759.1 mRNA downstream 50498 57446143 ~ 57551182 (+) False clasp1a
XM_036974753.1 mRNA downstream 50499 57446144 ~ 57551182 (+) False clasp1a
TU314786 other upstream 130525 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 1479284 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1479284 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1479284 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1494674 55900194 ~ 55900743 (+) True G275542
TU315509 other downstream 394089 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2657071 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2657071 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 2891743 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 3344594 60740239 ~ 60757350 (+) True G281591

Expression Profile