RNA id: TU315304


Basic Information

Item Value
RNA id TU315304
length 1208
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G277774
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57536806 ~ 57542559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gataggtacatacaggacggggcagaggggataggtacatacagtagggagcagaggggataggtacatacagtagggagcagaggggataggtacatacagtagggagcagaggggataggtacatacagtagggggcagaggggataggtacatacagtagggggcagaggtgataggtacatacagtagggggaaGAGGGGATCGTGACAGTAAATAGTGTGTTAGGTGGGCTTCCTTTGGGATGTAGGGTACAGACATAATAGTCAATAGTGGGTTATGTATTTATGTATTCCTACAGGGAAGCCCTACAGGGAAGCCCTTTGCTCCACTAAGAGCTGCGTCTGTTGTCAGGTATCCATACCAGTGGGAGGTTTGGAACACAGTGAGTAGTGTTATATGCTGACTAAAACAGTACTGCGTAACCGTTAGTCACTTTATCAAACACGTTTTTGCAACTATTGCTATAATATAGTCCATTATATGTTGCGGTAAGAGACATCATGCTTCTAGCAGGTCAGATATTGCTTCCAACAAGAACTGAGACATTcccttaataagcacaatgttAAATCAAGTGATTCATTCTACTACAAACGACCATGTTAGCATGCATATGGACAGGGTGTTAATGTGTTTCAGAACAGACAAATGTGTTCGGAGAACAGAAGACGAAAAaacagcagtcaagttttcacaTTGTTATTTAGCAACGACATCAGCCGGTAGAACTCTCACTTCAAAAAAACAAAGCAACAATCCATTCTCACAGTCCTTACATAAATACTGtttagtgttgtagtagtgttttGTTGGCCAACAAAAGTATTTTCACTCTCAAACCAGTCCATTTATCCACAATCAAAGTCGCAAGGCATAGCTACTGCAGGTTAGAGCGAGCGATAGAAAGGGCTAGAGAGGGTAAAGATGAGGTGGGAGAGGCCACACTTGAGATCGTTTCCCACTCGTTGAGGCAGTTTGGTGTCGGTGCGGCTCGGCGGGCGGAGCGTGCTTGGCATTGGACAGTGATTGGTTGATGAGCCACTACCTGCTTACACCTCTCTTCCAGGTGCCCCTCCAGTAAGGCTGCAGTACCGGACCTGCTTGATAGCTCCTCCACCACCCAGTTATGAAGGGTCTGGGGCACAGTGGCAGGGGGGTAGAATTATGGGTATTGTAGTTTTGACAAAGGAAAGCAGATGTttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315301 lncRNA downstream 2249 57533819 ~ 57534557 (-) True G277773
TU315292 lncRNA downstream 14193 57520154 ~ 57522613 (-) True G277765
TU315220 lncRNA downstream 30556 57455386 ~ 57506250 (-) False G277700
TU315218 lncRNA downstream 30556 57504148 ~ 57506250 (-) True G277700
TU315210 lncRNA downstream 88385 57447736 ~ 57448421 (-) True G277692
TU315316 lncRNA upstream 8138 57550697 ~ 57551251 (-) False G277784
TU315317 lncRNA upstream 8138 57550697 ~ 57551335 (-) True G277784
TU315315 lncRNA upstream 8841 57551400 ~ 57554253 (-) True G277783
TU315321 lncRNA upstream 16089 57558648 ~ 57559078 (-) True G277788
TU315325 lncRNA upstream 22872 57565431 ~ 57565654 (-) True G277792
XR_005051425.1 mRNA downstream 55086 57481596 ~ 57481720 (-) True LOC118964377
XM_036974746.1 mRNA downstream 109462 57416082 ~ 57427344 (-) True LOC110520281
XM_036974747.1 mRNA downstream 109530 57416082 ~ 57427276 (-) False LOC110520281
XM_036974748.1 mRNA downstream 109530 57416082 ~ 57427276 (-) False LOC110520281
XM_036974749.1 mRNA downstream 110091 57416082 ~ 57426715 (-) False LOC110520281
XM_036974790.1 mRNA upstream 55987 57598546 ~ 57609026 (-) False LOC110520284
XM_021597475.2 mRNA upstream 89581 57632140 ~ 57734917 (-) False LOC110520285
XM_021597476.2 mRNA upstream 367048 57909607 ~ 57919306 (-) True LOC110520286
XM_021597478.2 mRNA upstream 391511 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA upstream 391512 57934071 ~ 57943306 (-) True si:dkey-3d4.3
TU315188 other downstream 133231 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 239044 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 2125319 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 2125319 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2417594 55103494 ~ 55119212 (-) True LOC110520227
TU315276 other upstream 41827 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5172016 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7426990 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7471700 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 7512141 65054700 ~ 65055211 (-) False G286638

Expression Profile