RNA id: TCONS_00030295


Basic Information

Item Value
RNA id TCONS_00030295
length 3794
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_014920
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33782783 ~ 33786703 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGGTATGAACATATTTATTACACAGTAAAGAGTACAACAATACCAGAATCATACTGCAAAGATTCACAGACTGACAGACCATTTACtacagcccccccccccccaaaacgagagaataaaataaagaaaacagatTAAACAAGAAACAGACATAGTAGACTCAAAAAACCCTAGAGTATACTGAAACGGTGTGATGACGGACCACACCCTCCCAGCCCACCTGTAACCTGTGGTTCTTGTTTCCGTTAAGTATTGCACAACGACTTTCatgagtttaatttttttttcacaataaaatttTCGAACAACCCTATCACTTCCCATCCTGAACCCACCCCACCGAGTCATTTCACTTTATGTTCATTTATCATCCCAAAGTTGAATTCACTTTAcaaactgaagaaagaaaaaaaagcgaAACAAAATAGCGCAAGAACACCTGGCAAAAAAAGGCATGCGCGTATTCACCAACTGTTCGATCAGGTTTGGTGCAAATTCCCAATAAACACAAACCTAAATGACACCAACATGTGGCCAAGCGTATCTCACAACAGAAGACGGAAACTGGGGGGAAAGGGGGTGCAGGAGAAGAGAAGGGCAATAGGAATATATCACATTTCTCATCTTTGACCATTACTGAATTATAGTGTATATCAAATGAAGTCAACACTctgaaatattttctttttttactttgagTCGACTCAAAGTGATTTGTACGCATGATAAacttaaaattaactttttttttttttcattttacatatCCTAtccattaagcttttttttttttctcatgaggTCTGCATTGTTACCAAGTAGTGATATGGTTTGCAGCTatatgagcttttaactttgggTTTAAGTCCTGTTCTCATGTGCCCATTTGGTTTGACTAGACCAGTGTCCGCTCAGCGACTGGTGCTCCTAACGTGCTGTCAGAGGTAGAGTGAGACTTTTTGCCACAGAGGAAAAAAGGTTGTAGCAAAACAGACGTCCTAGAGTGGGAAGGAGAAGAAGGAGATTCTTAACGCTTTATCCGTGCTTATTTATTCAGGTCACCCTGATTGAACTCTACACTAACTGCAtgtatttcaaaaatagtttcaaGACAGCTCAGCTGGCAGATTCTGTGGAGATGTGGATGGGTGTCTTACACCCTTGATTTTTGGATTAATAACCGTAGCATACCGGAGGAGGCCGGAAGTGCGTCCAGAGCCAGCCTCTTCTCCTAAGAGGTCAAAAGCACAGCGTTTAGCACCATGAGCCAgctaatgcctcattcacactagcagcgactttgtagctgcctgtcgctatACCTGCAAACGCAGGTTTGAGCACGGAGAATACAACCAGCCTTTGAGCGAGCAGAGAgatctactggtgctcctattggctttCGCTCAAGAAAAATCGATCTTCATTTGCAtgaagttgaaggattctcaactttgtcgcatCTCTTGACTCTCCCACCTGGTCGCCAACAATTGCTGTTGCTCGACTAGGTCGCCAGAATTCGCCCACTCTCTGTTGAAATAAGTGGTGGCCTCTTCGCTTAGCTGCTGCGAGTCGCttatagtgtgaatgaggcttaagtGCTCGATCAGACCCCTCTTTCTCTTAAGCCAACAACGAGGTTGTGTCGTTTAGTTTCTCACATGGCTTTTAATCTTGAGCTGAAACACTTGGTTTGGTTATGCGCCGTTCATAAACAAGAAGAGCCTTTTGGGGAGACGAATCCAAACGATACGGAAGGAAAAAAGGACGACATTGAAACAGTTGTGAAAACCTCGCCACGGAGGATCTAGATGTGGGATCCACCTTCCGGTTATTGCTCAGTCCTTCGGACTACATCGTCCACACATCAAACCTTCTTTCCTCAGGAACTGCTACATGGTTTTGAGTGGCTCCTCCTCCCTATGAGCTGAACAGCCCTGGCTCTGGACAGGGGAGAGTTAAAGGTTTTGGAATGGAAACATTGCTCAATGTGGTTTCCCCTGATAAACACGTGGAGAAAACAAGAATGAGTCTCTTTTGTCATGTTTAAATCTTGAATAAAATCAGGTTTTGGTCCTTCATGTCTGTCTTTGGCTGTCTTCCATGTTATGTCTTTTGTAATACTGTGTATCCTGGTGCTCTGCAGTGTTAAAGCTGTCTGTTTTTCACCTCTGCATTTGGAAAGTTAGTTTCTTAGTGTCTTTTTtgtacactttttctttttttttgtagaaaacaaaacaacatatacCATAGCGTTCAGTATGCATGTGCATGCGCTGTCCTTAACTATTCAAAGCAAAATGTTTCGAAAAATGTGAACAAAAGCAGATCGTGGTGATACTTCTGTtttgtcttttgtcttttttcgcTTTTTTTCATAGGTTTTATCCATTTTTtaacaagaaaagaaaatcacAGATATGTAACGAAGCACTCCAAAGAAAACCTATGAGGTGAGGCTCCCTATGGAGAAAACAAAAATGCCAAAAGAAGCATGCTGAGAGAAACCGTGACAGTGCAAATACATTTATGTACGTCCCATGTACAAAAACATTTATGTTAGCATTCCATGTAACATGCTAGTTCTCAGAAAAACATCTGAATGAGACCGAAGTAGCAGCTCTGAGAGATAGCGTTTGCCTTTCGAGGACAACGGGGGaaaagttttttcttcttcttagaGAACAACAAGGGGACTAGCACAAACACATACGAATAGAAAAGCAGCTTGCGAAAGAtagagagacggagagagagaaaacaagagaaaatatGTTCTTCCTTTTTGCACCTAGAAAGACTAAAAAGTTGTGACTGTGGTTTAAACTATTAATGCGTTGTCACAATTGTCCAGCACATGTACAATAAATAACCATTGGAGACGGCACAGGACACAAGTGTTTAACACAATGAGATCTAGAAGGGCAAAAAGAAGCAGAACGAGGACTGATGGCGGGACAGGAGAGAGCTCCAACAGCCAGTGATTTATGGGGAATTCCTCAGCCCTTTGCTTCCCAGCGGCTGTCACAGTGAGGTTCTGACAGTCCTGCACTGCGTTTTATTTCTCAGACCATTGACCTGGATATTATCTTGCAGAAGAGGGGCGAACATCTGCGTTCCTTCACAATCTGCTGCACATCTGCAGAACTGAGCGCGTGAGCCAGAAACGCCGTCTACTCCACCACATCTGACACAGATGCCCTTCATGGCAACGACGAACGTCGTGTTGACTTCTTTACAAGGAACGCTGTCTTTTTGTCCTAATAAAAGTCAGAGTCTTTGCTTACATCAGCTGTGAAGTATTTCCTTGGTTTTGTCATTTAAAGTGTCTTTAATGAGGTCAAATAGTTTCATATCCCAGCTACTGGATAAAGAGCTTTGAGAACGGAACAAAGGAGGAGGGGAaacccaaaaaaataaatgaaggagaGGTCGAATATACTCATCAAGAGGTCCCGGCTGTCTACTCCATTTGTCTTCTTATTTACAAGAATGCAAGAGAGccacaacaacaataaaagacATGGCCAACAGTCATCCATAATAGCTGTGGCATTAATAAAGGACAATGAGAATTTCAAACAAAGAATATCTTTGCGTTCTCTATCATGGCAAGTCAATATGACCCGAAATGGACCTCCTGTGGGTGATCGCTCAAAGTAAGTACAGTCTTCTCTCTTTGTTAGTGCGCTAGCTTTAGCATTTTGGAGCAAGTGAGGCAGGTGAGTCGGCTTGGACTCTAGCGCGGCGTGTTCTCCACGGTGGAGGGCGTGCCGGGTGTGGCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029432 lncRNA downstream 507794 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00029429 lncRNA downstream 514657 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029413 lncRNA downstream 1150645 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029371 lncRNA downstream 2817122 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 2947686 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030296 lncRNA upstream 401489 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 495183 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00030298 lncRNA upstream 874009 34660712 ~ 34674853 (-) False XLOC_014929
TCONS_00030299 lncRNA upstream 874009 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00030300 lncRNA upstream 874009 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00029433 mRNA downstream 412512 33368152 ~ 33370271 (-) True XLOC_014918
TCONS_00029431 mRNA downstream 507748 33258572 ~ 33275035 (-) False XLOC_014917
TCONS_00029430 mRNA downstream 507805 33258572 ~ 33274978 (-) False XLOC_014917
TCONS_00029428 mRNA downstream 570760 33200266 ~ 33212023 (-) True XLOC_014916
TCONS_00029427 mRNA downstream 695537 33084066 ~ 33087246 (-) True XLOC_014915
TCONS_00029435 mRNA upstream 42273 33828976 ~ 33835396 (-) False XLOC_014921
TCONS_00029438 mRNA upstream 49736 33836439 ~ 33850201 (-) False XLOC_014922
TCONS_00029440 mRNA upstream 100886 33887589 ~ 34011340 (-) False XLOC_014923
TCONS_00029442 mRNA upstream 101845 33888548 ~ 34063567 (-) False XLOC_014923
TCONS_00029441 mRNA upstream 101845 33888548 ~ 34063567 (-) False XLOC_014923
TCONS_00029434 other downstream 410089 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029414 other downstream 1133002 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029412 other downstream 1156904 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029400 other downstream 1452153 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 1632672 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029436 other upstream 44666 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 46817 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029439 other upstream 60431 33847134 ~ 33850219 (-) True XLOC_014922
TCONS_00029443 other upstream 101901 33888604 ~ 33915864 (-) False XLOC_014923
TCONS_00029444 other upstream 170123 33956826 ~ 33960726 (-) False XLOC_014923

Expression Profile

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