RNA id: TU315504



Basic Information


Item Value
RNA id TU315504
length 230
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G277968
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57785432 ~ 57785661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acagtgtggagtgcgattgagattgcctaatcttttggggcggtatgcgaattggagtgggtctagggtatccgggaggatgctgttgatgtgagccatgaccagcctttcaaagcacttcatggctaccaacatgagtgccacggggcggtaatcatttaagcaggttaccttcgcttccttgggcacagggactatggtggtctgcttgaaacatgtagttattacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU315502 lncRNA downstream 608 57784548 ~ 57784824 (-) True G277966
TU315332 lncRNA downstream 143643 57638397 ~ 57641789 (-) True LOC110520285
TU315274 lncRNA downstream 178412 57595333 ~ 57607020 (-) True LOC110520284
TU315341 lncRNA downstream 193439 57591700 ~ 57591993 (-) True G277808
TU315340 lncRNA downstream 193884 57591292 ~ 57591548 (-) True G277807
TU315510 lncRNA upstream 4154 57789815 ~ 57790145 (-) True G277974
TU315765 lncRNA upstream 149604 57935265 ~ 57988629 (-) True G278220
TU316365 lncRNA upstream 540811 58326472 ~ 58327641 (-) True G278797
TU316492 lncRNA upstream 692544 58478205 ~ 58478560 (-) True G278917
TU316516 lncRNA upstream 709831 58495492 ~ 58495703 (-) True G278941
XM_021597475.2 mRNA downstream 50515 57632140 ~ 57734917 (-) False LOC110520285
XM_036974790.1 mRNA downstream 176406 57598546 ~ 57609026 (-) False LOC110520284
XR_005051425.1 mRNA downstream 303712 57481596 ~ 57481720 (-) True LOC118964377
XM_036974746.1 mRNA downstream 358088 57416082 ~ 57427344 (-) True LOC110520281
XM_036974748.1 mRNA downstream 358156 57416082 ~ 57427276 (-) False LOC110520281
XM_021597476.2 mRNA upstream 123946 57909607 ~ 57919306 (-) True LOC110520286
XM_021597478.2 mRNA upstream 148409 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA upstream 148410 57934071 ~ 57943306 (-) True si:dkey-3d4.3
LOC118964362 mRNA upstream 716896 58502557 ~ 58502699 (-) True LOC118964362
XM_036974792.1 mRNA upstream 958240 58743901 ~ 58761334 (-) False LOC110520288
TU315276 other downstream 196249 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 381857 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 487670 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 2373945 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 4928914 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7183888 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7228598 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 7269039 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 7269039 65054700 ~ 65075985 (-) True G286638

Expression Profile