RNA id: TCONS_00029436


Basic Information

Item Value
RNA id TCONS_00029436
length 591
RNA type nonsense_mediated_decay
GC content 0.40
exon number 6
gene id XLOC_014921
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33828976 ~ 33835396 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTTGACAGAGCTCAATTTGGGAAACAATGTTCTTGAGGAGGTCCCATCTGTGTTGAAACACCTCTGCTGtctaaataaactttatttatatgGGAACCAAATCAGCTATTTGTCAGCAGAGGTGTTGGAGGGTTTACCAAACCTTGTGCTTCTCAATTTGAATCACAACAAAATCAAAGTCATTCCCTCAGAAATAAAAAGtctcTGTCGCCTACAAAGCATCAGCATCACAGACAATCATTTGGAGCAGATTCCAGCTGAACTGGGTTTGATGAAGAGTCTGACTGAGATTAACTTCACTAATAATAAACTGACTCAAATACCACAACAGTTATGTGATTTATCACAGCTCAGGAGGTTGTATTTGGCCCGAAACAAGCTCACAGAAATACCAGAGggAGTTCTTGGTTGGAAAAACCTGAAGATCTTAGATGTTGCAGGAAATCGTTTATCTGTGTTTCCATTTGATGAAACAGTTTAGTCCCATTCTCACTGATGGAGTCAATTCAAGAGAAAGAGATCCTCACATTAAAGGAACTCTCAGCCAGGCTCATTCTCCAGGAGAGCACTAATATATTGTCAGCGGTAT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-213 Predicted to be involved in signal transduction. Orthologous to human LRRC69 (leucine rich repeat containing 69).

Ensembl:

ensembl_id ENSDART00000151680

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030295 lncRNA downstream 44666 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00029432 lncRNA downstream 556380 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00029429 lncRNA downstream 563243 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029413 lncRNA downstream 1199231 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029371 lncRNA downstream 2865708 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00030296 lncRNA upstream 353757 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 447451 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00030298 lncRNA upstream 826277 34660712 ~ 34674853 (-) False XLOC_014929
TCONS_00030299 lncRNA upstream 826277 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00030300 lncRNA upstream 826277 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00029433 mRNA downstream 461098 33368152 ~ 33370271 (-) True XLOC_014918
TCONS_00029431 mRNA downstream 556334 33258572 ~ 33275035 (-) False XLOC_014917
TCONS_00029430 mRNA downstream 556391 33258572 ~ 33274978 (-) False XLOC_014917
TCONS_00029428 mRNA downstream 619346 33200266 ~ 33212023 (-) True XLOC_014916
TCONS_00029427 mRNA downstream 744123 33084066 ~ 33087246 (-) True XLOC_014915
TCONS_00029438 mRNA upstream 2004 33836439 ~ 33850201 (-) False XLOC_014922
TCONS_00029440 mRNA upstream 53154 33887589 ~ 34011340 (-) False XLOC_014923
TCONS_00029442 mRNA upstream 54113 33888548 ~ 34063567 (-) False XLOC_014923
TCONS_00029441 mRNA upstream 54113 33888548 ~ 34063567 (-) False XLOC_014923
TCONS_00029445 mRNA upstream 129304 33963739 ~ 33996277 (-) True XLOC_014923
TCONS_00029434 other downstream 458675 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029414 other downstream 1181588 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029412 other downstream 1205490 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029400 other downstream 1500739 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 1681258 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029439 other upstream 12699 33847134 ~ 33850219 (-) True XLOC_014922
TCONS_00029443 other upstream 54169 33888604 ~ 33915864 (-) False XLOC_014923
TCONS_00029444 other upstream 122391 33956826 ~ 33960726 (-) False XLOC_014923
TCONS_00029446 other upstream 143443 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029449 other upstream 246511 34080946 ~ 34089305 (-) True XLOC_014925

Expression Profile

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