RNA id: TU316492



Basic Information


Item Value
RNA id TU316492
length 356
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G278917
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58478205 ~ 58478560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttgcacactcttggcattctctcaaccagcttcacctggaatgctttttcagtAGTCTTGAAGGAATTTCCACATGTGCTGagcgcttgttggctgcttttccttcactctgtggtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggtcttctgatgcagcactccatcacactcctccttggtcaaatagccctttccactggtctaatgtccattgctcgtgtttcttggcccaagcaagtctcttcttattattggtgtccttaaagagtggtttctttgcagcaattcgaccatgaaggcctgattcacacagtctcatctgagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU316365 lncRNA downstream 150564 58326472 ~ 58327641 (-) True G278797
TU315765 lncRNA downstream 489576 57935265 ~ 57988629 (-) True G278220
TU315510 lncRNA downstream 688060 57789815 ~ 57790145 (-) True G277974
TU315504 lncRNA downstream 692544 57785432 ~ 57785661 (-) True G277968
TU315502 lncRNA downstream 693381 57784548 ~ 57784824 (-) True G277966
TU316516 lncRNA upstream 16932 58495492 ~ 58495703 (-) True G278941
TU316521 lncRNA upstream 18699 58497259 ~ 58497557 (-) True G278946
TU316650 lncRNA upstream 94419 58572979 ~ 58573239 (-) True G279071
TU316812 lncRNA upstream 198187 58676747 ~ 58677044 (-) True G279231
TU316826 lncRNA upstream 209423 58687983 ~ 58688198 (-) True G279243
XM_021597478.2 mRNA downstream 534893 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA downstream 534899 57934071 ~ 57943306 (-) True si:dkey-3d4.3
XM_021597476.2 mRNA downstream 558899 57909607 ~ 57919306 (-) True LOC110520286
XM_021597475.2 mRNA downstream 743288 57632140 ~ 57734917 (-) False LOC110520285
XM_036974790.1 mRNA downstream 869179 57598546 ~ 57609026 (-) False LOC110520284
LOC118964362 mRNA upstream 23997 58502557 ~ 58502699 (-) True LOC118964362
XM_036974792.1 mRNA upstream 265341 58743901 ~ 58761334 (-) False LOC110520288
XM_036974791.1 mRNA upstream 265341 58743901 ~ 58761841 (-) True LOC110520288
XM_021597480.2 mRNA upstream 287867 58766427 ~ 58774628 (-) True LOC110520289
XM_036974795.1 mRNA upstream 297071 58775631 ~ 58862354 (-) False LOC110520290
TU315276 other downstream 889022 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 1074630 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 1180443 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 3066718 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 4236015 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 6490989 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 6535699 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 6576140 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 6576140 65054700 ~ 65075985 (-) True G286638

Expression Profile