RNA id: TU317518


Basic Information

Item Value
RNA id TU317518
length 219
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G279890
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59198433 ~ 59198651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caattaactcattaggaatttggggtaCCACGAGAGCggttgtttaaagagttaccatctcccgaattcaACTCTTAAGGTCTTtacctacagtggcttgcgaaagtattcacccccttggcatttttcctattttgttgccttacaacctggaattaaaatagatttttggggggtttgtatcatttgatttacacaacatgcctagcactttgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317483 lncRNA upstream 26519 59171669 ~ 59171914 (+) True G279855
TU317216 lncRNA upstream 143315 59052772 ~ 59055118 (+) True G279597
TU317085 lncRNA upstream 264737 58933384 ~ 58933696 (+) True G279481
TU316988 lncRNA upstream 368125 58823855 ~ 58830308 (+) True G279385
TU316963 lncRNA upstream 397042 58778970 ~ 58801391 (+) True G279365
TU317525 lncRNA downstream 4301 59202952 ~ 59203160 (+) True G279897
TU317539 lncRNA downstream 13828 59212479 ~ 59212718 (+) True G279911
TU317608 lncRNA downstream 78347 59276998 ~ 59277457 (+) True G279977
TU317627 lncRNA downstream 101374 59300025 ~ 59300428 (+) True G279996
TU317653 lncRNA downstream 140003 59338654 ~ 59339123 (+) False G280021
XR_005039918.1 mRNA upstream 104228 59093144 ~ 59094205 (+) True LOC118944557
XM_021597492.2 mRNA upstream 133641 58961640 ~ 59064792 (+) True abca12
XM_021597491.2 mRNA upstream 249809 58936477 ~ 58948624 (+) True pofut2
XM_036965026.1 mRNA upstream 727843 58039857 ~ 58470590 (+) False LOC110504354
XR_005051240.1 mRNA upstream 1219628 57976065 ~ 57978805 (+) True LOC118964187
XR_002470749.2 mRNA downstream 314794 59513445 ~ 59515061 (+) True LOC110505376
XM_021597499.2 mRNA downstream 358027 59556678 ~ 59581956 (+) False ikzf2
XM_021597497.2 mRNA downstream 358417 59557068 ~ 59581956 (+) False ikzf2
XM_021597498.2 mRNA downstream 358421 59557072 ~ 59581956 (+) True ikzf2
XM_036974796.1 mRNA downstream 671908 59870559 ~ 60052294 (+) True erbb4b
TU315509 other upstream 1408101 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 1933541 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 3282300 55915329 ~ 55916133 (+) False G275553
TU317976 other downstream 854065 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 854065 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 1088737 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 1541588 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 1692873 60891524 ~ 60893778 (+) False G281714

Expression Profile