RNA id: TU318662


Basic Information

Item Value
RNA id TU318662
length 207
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G280977
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60088164 ~ 60088370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacagtacaacacacacagagagccctatgggccctggtcaaagtagtgcacaacaAAGGGAATAGgcagccatttgggatgcatcctgggTTAGTTTGTTATCTCTGAGGAGTGTTTACTGGCCATTCATCACCATAATGGGAACAGCCCTCTACTAAATAACTATTCCTTTCTCAACACTATCCCAAATTGCACTCTATTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318635 lncRNA upstream 26934 60060966 ~ 60061230 (+) True G280950
TU317993 lncRNA upstream 396974 59607537 ~ 59691190 (+) True G280331
TU317986 lncRNA upstream 494764 59593130 ~ 59593400 (+) True G280324
TU317890 lncRNA upstream 611176 59474706 ~ 59476988 (+) True G280240
TU317810 lncRNA upstream 678084 59409672 ~ 59410080 (+) True G280168
TU318680 lncRNA downstream 11826 60100196 ~ 60100412 (+) True G280994
TU318681 lncRNA downstream 12406 60100776 ~ 60101155 (+) True G280995
TU318714 lncRNA downstream 38431 60126801 ~ 60127026 (+) True G281024
TU318741 lncRNA downstream 69436 60157806 ~ 60158118 (+) True G281047
TU318746 lncRNA downstream 76109 60164479 ~ 60166148 (+) False G281052
XM_036974796.1 mRNA upstream 35870 59870559 ~ 60052294 (+) True erbb4b
XM_021597499.2 mRNA upstream 506208 59556678 ~ 59581956 (+) False ikzf2
XM_021597497.2 mRNA upstream 506208 59557068 ~ 59581956 (+) False ikzf2
XM_021597498.2 mRNA upstream 506208 59557072 ~ 59581956 (+) True ikzf2
XR_002470749.2 mRNA upstream 573103 59513445 ~ 59515061 (+) True LOC110505376
XR_005039919.1 mRNA downstream 179272 60267642 ~ 60269899 (+) True LOC110505381
XM_021581343.1 mRNA downstream 188875 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA downstream 189074 60277444 ~ 60286077 (+) True myl1
XR_005051347.1 mRNA downstream 294304 60382674 ~ 60383352 (+) True LOC118964303
XM_021597524.2 mRNA downstream 546169 60634539 ~ 60654313 (+) True tgfbr2l
TU317976 other upstream 33747 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 33747 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2297832 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 2823272 57264567 ~ 57264892 (+) True G277296
TU312836 other upstream 4172031 55915744 ~ 55916133 (+) False G275553
TU318844 other downstream 199018 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 651869 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 803154 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 803154 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 945396 61033766 ~ 61037105 (+) True G281996

Expression Profile