RNA id: TCONS_00029444


Basic Information

Item Value
RNA id TCONS_00029444
length 310
RNA type processed_transcript
GC content 0.45
exon number 4
gene id XLOC_014923
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 33887589 ~ 34063567 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTGATGGGGACAATGTGAACATCCTTGATTGTCCTCTCACAgaGATGGCTCATATTTTAGCACAGAAGCAGCTGCGCTCCATCATCCTCAGTAATGTGATCAGAAGCAACAAACCCATCAATGATGAAATGGCCCACCAGCTCTATGTTCTGCAAGTCTTGACCTTTAACCTATTAGAAGATCGTATGATGACAAAAATGGACCCTCAGGACCAGGCTCAGAGGGACATTATTTTCGAGCTACGCAGAATCGCTTTCGATGTTGAATGCGAGTCCAACAACAGTGGCAGCATTGAGAAGCGCAAGTC

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0048870 cell motility biological_process
GO:0060271 cilium assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0032045 guanyl-nucleotide exchange factor complex cellular_component
GO:0005886 plasma membrane cellular_component

KEGG:

id description
ko04062 Chemokine signaling pathway
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05100 Bacterial invasion of epithelial cells

ZFIN:

id description
ZDB-GENE-040426-2069 Predicted to enable SH3 domain binding activity. Acts upstream of or within cilium assembly; lymphangiogenesis; and positive regulation of angiogenesis. Predicted to be located in cytoplasm. Predicted to be part of guanyl-nucleotide exchange factor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including blood vessel; immature eye; mesoderm; nervous system; and pronephric tubule. Orthologous to human ELMO1 (engulfment and cell motility 1).

Ensembl:

ensembl_id ENSDART00000162706

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030295 lncRNA downstream 170123 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00029432 lncRNA downstream 681837 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00029429 lncRNA downstream 688700 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029413 lncRNA downstream 1324688 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029371 lncRNA downstream 2991165 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00030296 lncRNA upstream 227466 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 321160 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00030298 lncRNA upstream 699986 34660712 ~ 34674853 (-) False XLOC_014929
TCONS_00030299 lncRNA upstream 699986 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00030300 lncRNA upstream 699986 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00029438 mRNA downstream 106625 33836439 ~ 33850201 (-) False XLOC_014922
TCONS_00029435 mRNA downstream 121430 33828976 ~ 33835396 (-) False XLOC_014921
TCONS_00029433 mRNA downstream 586555 33368152 ~ 33370271 (-) True XLOC_014918
TCONS_00029431 mRNA downstream 681791 33258572 ~ 33275035 (-) False XLOC_014917
TCONS_00029430 mRNA downstream 681848 33258572 ~ 33274978 (-) False XLOC_014917
TCONS_00029445 mRNA upstream 3013 33963739 ~ 33996277 (-) True XLOC_014923
TCONS_00029447 mRNA upstream 113151 34073877 ~ 34089303 (-) False XLOC_014925
TCONS_00029448 mRNA upstream 113491 34074217 ~ 34089205 (-) False XLOC_014925
TCONS_00029450 mRNA upstream 130826 34091552 ~ 34117056 (-) False XLOC_014926
TCONS_00029452 mRNA upstream 730919 34691645 ~ 34742440 (-) False XLOC_014930
TCONS_00029443 other downstream 40962 33888604 ~ 33915864 (-) False XLOC_014923
TCONS_00029439 other downstream 106607 33847134 ~ 33850219 (-) True XLOC_014922
TCONS_00029437 other downstream 121458 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029436 other downstream 122391 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029434 other downstream 584132 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029446 other upstream 17152 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029449 other upstream 120220 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029451 other upstream 131846 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029472 other upstream 1460109 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029473 other upstream 1460951 35421677 ~ 35428894 (-) True XLOC_014941

Expression Profile

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