RNA id: TU318750


Basic Information

Item Value
RNA id TU318750
length 1521
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G281052
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60164479 ~ 60166148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAAAATTGTCCCCAAAATAACTCAAAACTTTCAGatagttttttttaaaagacAGAAGCACTTTGGATACATTCATAACTTGATATCGGCCTCAAAATATCAAGAATGTAGAAGCTATCTCGAAGGGTGCCTAGTAaaacacactcaacacacacacactcaaccagtggtgtaaagtatttcagtaaaaatactttaaagtactacttaagaagTTTTtgttgggggtatctgtactttactttgctatttatattttCGACAAATTTTACTAcattttactacattcctaaagaaaataatgtacattttacctgacacccaaaagtactcgttacattttgaatgcttagtaggacaggaaaattgtcccaTTCAcggacttatcaagagaacacgtggtcatccctgctgcctctgatctggtggaatcACTAAACAAAATGCATATTTTcaaaatgatgtctgagtgttggagtgtgcccctggttatcTGTACATTTTTAATACAAGACAATGATGCCGTccgctttgcttaatataaggaatttgaaatgatttctacCTTAACTTTAGACACTtaagaaccaaatacttttagacttttacttaagGGGGGTGACTCACTtgtacttgagtaactttctaagTATCTAtagttttactcaagtatgacaattgggtacttttcccaacactgcactcaacacacacatacaatcctAGTTGGGTCCATAGCACCATCTTTAGTCCATAACCAAAATGCATGAATGCATGAAGCAGTAGTGTGGGTCACTGGCCAAACTGAGTCCTTTAATGTAGCAGGCATTACTACGTACAAATCACACCGTGCCGACCAACGGCTGAAAGCAGCGGCTGGCCGCGGTGGGATAGTTAAAGACGATCCGTGGTGAGTCAACATGTAGAGTCACTGGAACAGAAAATGATGCCCGGTGTTCTGGTCAGAGATAATAGGATGGCCACCCGCTGCTTTTAAAAGTTTGTCAGCAAGGTCTGTTTTAGACTTTAAAATGTTGAAGGCTTCTGAACTGGCGAACAACATATCAAAGGCGTTTTATGTGTTTTCAGTATGAGGAAAATACAGCCATACTAAGATAAAGAAAATGTGTTTGTGGAGTGTAAACAGGAAAGATACTGCTCTTGGATGTGGTTAAATGAGATCACAAACAAACATACTATGTCCTCTATCCCTAGATGTGAAATGTCTTTAAAACACATGTATAAAGATTTGGCATATAATTATGGGCTACATTTACAGGTGTCAATAACAATGGTTTACCCCCTTTAActtctgggagagagggagggtcagatataggggggggggggtacagctCTAGCTCGGCAGTCTGGTGGCAGTGTCCCTAAGGCGGTCAGCTTCCTTTTCGAGGTCAGCGTCCCGTTGGCGGTCAGCGTCCCGTTGGCGGTAGTGGAACAGGCTGGTGGTGTCCAACTCGCTGGCATACTTTATGGCCTCAGCAAACAGCTTGACCACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318741 lncRNA upstream 6510 60157806 ~ 60158118 (+) True G281047
TU318714 lncRNA upstream 37602 60126801 ~ 60127026 (+) True G281024
TU318681 lncRNA upstream 63473 60100776 ~ 60101155 (+) True G280995
TU318680 lncRNA upstream 64216 60100196 ~ 60100412 (+) True G280994
TU318662 lncRNA upstream 76258 60088164 ~ 60088370 (+) True G280977
TU318754 lncRNA downstream 2091 60168239 ~ 60168442 (+) True G281054
TU318782 lncRNA downstream 49736 60215884 ~ 60216112 (+) True G281082
TU318829 lncRNA downstream 96220 60262368 ~ 60262582 (+) True G281128
TU318843 lncRNA downstream 121240 60287388 ~ 60303967 (+) False G281141
TU318846 lncRNA downstream 124534 60290682 ~ 60292657 (+) False G281142
XM_036974796.1 mRNA upstream 112334 59870559 ~ 60052294 (+) True erbb4b
XM_021597499.2 mRNA upstream 582672 59556678 ~ 59581956 (+) False ikzf2
XM_021597497.2 mRNA upstream 582672 59557068 ~ 59581956 (+) False ikzf2
XM_021597498.2 mRNA upstream 582672 59557072 ~ 59581956 (+) True ikzf2
XR_002470749.2 mRNA upstream 649567 59513445 ~ 59515061 (+) True LOC110505376
XR_005039919.1 mRNA downstream 101494 60267642 ~ 60269899 (+) True LOC110505381
XM_021581343.1 mRNA downstream 111097 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA downstream 111296 60277444 ~ 60286077 (+) True myl1
XR_005051347.1 mRNA downstream 216526 60382674 ~ 60383352 (+) True LOC118964303
XM_021597524.2 mRNA downstream 468391 60634539 ~ 60654313 (+) True tgfbr2l
TU317976 other upstream 110211 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 110211 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2374296 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 2899736 57264567 ~ 57264892 (+) True G277296
TU312836 other upstream 4248495 55915744 ~ 55916133 (+) False G275553
TU318844 other downstream 121240 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 574091 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 725376 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 725376 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 867618 61033766 ~ 61037105 (+) True G281996

Expression Profile