RNA id: TU318939


Basic Information

Item Value
RNA id TU318939
length 1398
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G281221
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60164508 ~ 60165905 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATGTAGCCCATAATTATATGCCAAATCTTTATACATGTGTTTTAAAGACATTTCACATCTAGGGATAGAGGACATAGTATGTTTGTTTGTGATCTCATTTAACCACATCCAAGAGCAGTATCTTTCCTGTTTACACTCCACAAACACATTTTCTTTATCTTAGTATGGCTGTATTTTCCTCATACTGAAAACACATAAAACGCCTTTGATATGTTGTTCGCCAGTTCAGAAGCCTTCAACATTTTAAAGTCTAAAACAGACCTTGCTGACAAACTTTTAAAAGCAGCGGGTGGCCATCCTATTATCTCTGACCAGAACACCGGGCATCATTTTCTGTTCCAGTGACTCTACATGTTGACTCACCACGGATCGTCTTTAACTATCCCACCGCGGCCAGCCGCTGCTTTCAGCCGTTGGTCGGCACGGTGTGATTTGTACGTAGTAATGCCTGCTACATTAAAGGACTCAGTTTGGCCAGTGACCCACACTACTGCTTCATGCATTCATGCATTTTGGTTATGGACTAAAGATGGTGCTATGGACCCAACTaggattgtatgtgtgtgttgagtgcagtgttgggaaaagtacccaattgtcatacttgagtaaaactaTAGATActtagaaagttactcaagtacaAGTGAGTCACCCCCcttaagtaaaagtctaaaagtatttggttcttaAGTGTCTAAAGTTAAGgtagaaatcatttcaaattccttatattaagcaaagcggACGGCATCATTGTCTTGTATTAAAAATGTACAgataaccaggggcacactccaacactcagacatcattttgAAAATATGCATTTTGTTTAGTgattccaccagatcagaggcagcagggatgaccacgtgttctcttgataagtccgTGAAtgggacaattttcctgtcctactaagcattcaaaatgtaacgagtacttttgggtgtcaggtaaaatgtacattattttctttaggaatgtagtaaaatgTAGTAAAATTTGTCGaaaatataaatagcaaagtaaagtacagatacccccaacaAAAActtcttaagtagtactttaaagtatttttactgaaatactttacaccactggttgagtgtgtgtgtgttgagtgtgtttTACTAGGCACCCTTCGAGATAGCTTCTACATTCTTGATATTTTGAGGCCGATATCAAGTTATGAATGTATCCAAAGTGCTTCTgtcttttaaaaaaaactatCTGAAAGTTTTGAGTTATTTTGGGGACAATTTTAGTTAACGATCCTAACAGCTGATTAGTTGTATTTTACATGTATTTGTGTGTCCATGTTTATAAATAACATGAGCTTACATTTCAAAGTACTCACCCTTTTCTAAACATCTGCATTCTGCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318968 lncRNA downstream 973 60163330 ~ 60163535 (-) True G281250
TU318960 lncRNA downstream 8115 60156052 ~ 60156393 (-) True G281242
TU318945 lncRNA downstream 40200 60124105 ~ 60124308 (-) True G281227
TU318695 lncRNA downstream 56863 60107183 ~ 60107645 (-) True G281005
TU318672 lncRNA downstream 69635 60094615 ~ 60094873 (-) True G280986
TU318975 lncRNA upstream 11789 60177694 ~ 60178104 (-) True G281257
TU318990 lncRNA upstream 45919 60211824 ~ 60212085 (-) True G281272
TU319017 lncRNA upstream 92771 60258676 ~ 60259024 (-) True G281299
TU319059 lncRNA upstream 111420 60277325 ~ 60298773 (-) True G281320
TU319024 lncRNA upstream 121483 60287388 ~ 60290510 (-) False G281303
XM_021597493.2 mRNA downstream 1019672 59115416 ~ 59144836 (-) True vwc2l
XM_021597494.2 mRNA downstream 1019675 59115416 ~ 59144833 (-) False vwc2l
XM_021597482.2 mRNA downstream 1232254 58775631 ~ 58932254 (-) True LOC110520290
XM_021597483.2 mRNA downstream 1232255 58775631 ~ 58932253 (-) False LOC110520290
XM_021597486.2 mRNA downstream 1232256 58775631 ~ 58932252 (-) False LOC110520290
NM_001124709.1 mRNA upstream 73 60165978 ~ 60253769 (-) True cps1
XM_036974806.1 mRNA upstream 126498 60292403 ~ 60342883 (-) False map2
XM_036974807.1 mRNA upstream 126498 60292403 ~ 60342883 (-) False map2
XM_021597504.2 mRNA upstream 126498 60292403 ~ 60416303 (-) False map2
XM_036974797.1 mRNA upstream 126498 60292403 ~ 60416303 (-) False map2
TU315276 other downstream 2575325 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 2760933 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 2866746 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 4753021 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2548670 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4803644 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4848354 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4888795 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4888795 65054700 ~ 65075985 (-) True G286638

Expression Profile