RNA id: TU319031


Basic Information

Item Value
RNA id TU319031
length 3069
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G281303
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60287388 ~ 60303967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagaataatagtgaagacatcaaaatgttgaaataacacatatagaaccatataaccaagaaagtgtttcaaaaatgtattttatatttgagattcttcaaagtagccaccctttgtctagatgacagctttgcacacatttGGCATTAttttaaccagcttcatgaggtagtcaccaggaatgcatttcaatttacaggtgtgccaattaacaggtgtgccaattaacaggtgtgcctaatttgtggaatttctttccttcttaatgcgtttgtgttgtgacaaggcaggggtggcaaaagaccaagtccatattatgtcaataacagatcaaataagctaagagaaatgacagtccatcattactttaagacatgaaggtcagtcaatccggaagatttcaagaactttgaaagtttcttcaagtgcagtcgcaaaaaccatcaagttctATGATGAAACCTGCTCTAacaaggaccgccacaggaatggaagacccagagttacctctgctgcagagttcattagagttaccagcttcagaaattacagcccaaataaatgcttcacagagttcaagttaaTGATACATCTCAACATCTACTGTTCAGAgttgactgtgtgaatcaggccttcatggttgaattgctttagagaaacctctactaaaggacaccattaaagagagaaaaaacttgattgggccaagaaacatgagcaatgaacattagacttgtggaaatctgtcctttgtcctgatgaatccaaatttgagatttttggttccaactgccatgtctttgtgagacatggcagtaggtgaacggatgatctccatgtgtgtggttcccaccgtaaagcatggaggaggaggtgtgatgtgtgggggtgctttctggtgacactgtctgtgatttatttacaattgaaggcacacttaaccagcatggctaccacagcattctgcagcaatactccatcccatctggtctgtgcttagtgggactatcatttgtttttcaacaggacaatgacccaaaacacacctccatgctgtgtaagggcaatttgaccaagaaggatgagatggtttgggatgagttggaccgcagagtgaaggaaaggcagccaacaagtgctcagcatatgttggaactccttcaagactgttggaaaagcattccagattaatctggttgagagaatgccaagagggtgcaaagctgtcattaaggcaaaaggtggctactttgaagaatctcaaatctaaaatatattctgatttgcttttaacactgttttggttactacgtgattccatgtgtgttatttcatagttttgatgtcttcactaatattctaacatgtagaaaatagtttttaaaaaattcaaacttaaatgagttggtgtgtccaaacttttgactggtactgtatatatatatatacagtatatatgcgAGCTCTTTGTCAGCAACAACATCTCTTCAAAAAACGATTTAaaaaaagtgagaaaaaaaagtcCTTTAAGTTTAACTTATTGCAACAATTGCATTACTGCAAGCACTAGATAATGGTATGATGAGCATGTATCAATTCTAGTTACGGAAAGAGGCTATTTTCTATTTGAAATAAAAGGATTTGAGTAAGTTATTTACTGAATCATTGGATAAAGATATGAACACTTCTTCATGTTTTTGTAGATATTAGTTGACTAGTATGTTATGCTTGTTGAAGTTGACTTCAGACAACTGTGCTGATATTGTTAAGACGTGCATCTTTCAGGCCTGCAATAGAGTACTAAAGGCCCTGTGGCAGACTAgcttcctgtccagggggtgtacttgtacatcaagctgcctcacactacagaaacaggagttaGGCTCCTGCCCATATGGGCCATTCTGGCTCGAACAGGGCTTATTTTACTTAGAGTATTAAATGTACCCTAACTATGTTACTTAACTATCTATCACCTTGTCCGAGAGCCCGTGGATTTCGATGATAAAAAGTCAGGTTACAATCAAGATATTTTTTAGAGTTGAATCATTCCAAGTTGCAGCAGCACATACTTTAGTAGCACAACACATTAGGCTACATCTCCATTACTTCACTTCTCTGTCACTCACACATCTCTCCCGTGAATCCTCCTCACACGCAGGTGAGTCTGGGAAGGGTAGTTTCATATTAAGAGTCCCAACATAAAATCTCAATGGCAAAGGCAATGCCATAATACAATTCTCAGATACACATGACATATTTctgattataaaatatattttactttCAGAGTACTAAATAATGCTACTCTCAAGAGTTCTCTCTGGGAGTTTTTCTTCTAGAAGGCTGGTTTGCCAGTCCTGGTTAAGTTTAAGAGGATGCTGCAGTGATTCTCATCTCACAAATCTCAGTTCAAAAGAAACTTTGATGTAGCTGAAAGCTCACAGAAGCTGTGATCACGATCCATTCACTAACGCTAGCTACAGTAGGCATTGGATGGCTGTAAGATCTTTTAGTCCATAGTGTTTGATGAACAACCCAAGGCTCTTCGAGCAGGCTGAGAATGCACTCAAGAGGGCTTGCAGTTGTCTGAACAATATTGTGAATGAAACTATGACTATTATTTAAATATTCAATTTAGGAAGCAGCTGTGGAACTCTGGACCCTGTGTCCTTACAGTTCACTTCTAGATGCTAGGTTTGTTTTGTGTAAAACATTTAGGGTGGGGAAATAAAGGGGGAAAAtgcataaaaaaaatacatttcatataAACAAACTTAAAAAAAGGAAACTCAACAAATATTGTTGCATCTGTTTGATAAAGTGTTACGGTGTATTTTTTCTGTTGCCATTGTGGTATTcagccctccttcctctcctagTATTCCTGATGTTTGTTTGCTTCTATGTACTTTCTGCATCCCCCTATCTCCTATCCTCTACCCCAACCTACAGCAACTGTTAATGTCATTAAAATTAGATGTACACAGTTTTTTCTCCTGTTGATAAGGTACTAATATAAAAATGCTCTTAACAATTAATGACAATAAAAAAACTACGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319017 lncRNA downstream 28364 60258676 ~ 60259024 (-) True G281299
TU318990 lncRNA downstream 75303 60211824 ~ 60212085 (-) True G281272
TU318975 lncRNA downstream 109284 60177694 ~ 60178104 (-) True G281257
TU318939 lncRNA downstream 121483 60164508 ~ 60165905 (-) True G281221
TU318968 lncRNA downstream 123853 60163330 ~ 60163535 (-) True G281250
TU319038 lncRNA upstream 43336 60333949 ~ 60342845 (-) True map2
TU319098 lncRNA upstream 60950 60351563 ~ 60352019 (-) True G281359
TU319114 lncRNA upstream 88314 60378927 ~ 60379126 (-) True G281375
TU319115 lncRNA upstream 90366 60380979 ~ 60381185 (-) True G281376
TU319129 lncRNA upstream 115182 60405795 ~ 60406060 (-) True G281390
NM_001124709.1 mRNA downstream 33619 60165978 ~ 60253769 (-) True cps1
XM_021597493.2 mRNA downstream 1142552 59115416 ~ 59144836 (-) True vwc2l
XM_021597494.2 mRNA downstream 1142555 59115416 ~ 59144833 (-) False vwc2l
XM_021597482.2 mRNA downstream 1355134 58775631 ~ 58932254 (-) True LOC110520290
XM_021597483.2 mRNA downstream 1355135 58775631 ~ 58932253 (-) False LOC110520290
XM_036974806.1 mRNA upstream 1790 60292403 ~ 60342883 (-) False map2
XM_036974807.1 mRNA upstream 1790 60292403 ~ 60342883 (-) False map2
XM_021597504.2 mRNA upstream 1790 60292403 ~ 60416303 (-) False map2
XM_036974797.1 mRNA upstream 1790 60292403 ~ 60416303 (-) False map2
XM_036974798.1 mRNA upstream 1790 60292403 ~ 60416303 (-) False map2
TU315276 other downstream 2698205 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 2883813 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 2989626 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 4875901 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2423962 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4678936 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4723646 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4764087 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4764087 65054700 ~ 65075985 (-) True G286638

Expression Profile