RNA id: TU318921


Basic Information

Item Value
RNA id TU318921
length 249
lncRNA type intronic
GC content 0.41
exon number 1
gene id G281203
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60392121 ~ 60392369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccagctcacactctcaaacacatagatcctctgaacgcagctcactctccagatcccaatcacctgaattctgatcacctgttcacacacctgtatgtcatttacacaaactatttagttcagttctttgcaccccatcattgtgaggtattgtttgttttgatacACATTTCTATTTGGAGCTCTGTTTTTTCCTCTATTAGTCCTCCGTTGTATCATAGTTTTGGCCACCCTCACTAACAACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318918 lncRNA upstream 2714 60389149 ~ 60389407 (+) True G281200
TU318906 lncRNA upstream 12697 60379208 ~ 60379424 (+) True G281197
TU318872 lncRNA upstream 68989 60322153 ~ 60323132 (+) True G281166
TU318843 lncRNA upstream 88154 60287388 ~ 60303967 (+) False G281141
TU318930 lncRNA downstream 13929 60406298 ~ 60406524 (+) True G281212
TU318937 lncRNA downstream 22592 60414961 ~ 60415185 (+) True G281219
TU319204 lncRNA downstream 134161 60526530 ~ 60526829 (+) True G281461
TU319217 lncRNA downstream 150052 60542421 ~ 60542742 (+) True G281474
TU319256 lncRNA downstream 197288 60589657 ~ 60593889 (+) True G281509
XR_005051347.1 mRNA upstream 8769 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 106041 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 106044 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 122222 60267642 ~ 60269899 (+) True LOC110505381
XM_036974796.1 mRNA upstream 339827 59870559 ~ 60052294 (+) True erbb4b
XM_021597524.2 mRNA downstream 242170 60634539 ~ 60654313 (+) True tgfbr2l
XM_036974822.1 mRNA downstream 938990 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 939174 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 1083507 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 1197689 61590058 ~ 61647253 (+) False LOC110504376
TU318844 other upstream 101554 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 337704 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 337704 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2601789 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3127229 57264567 ~ 57264892 (+) True G277296
TU319365 other downstream 347870 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 499155 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 499155 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 641397 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1565019 61957388 ~ 61961475 (+) True G282707

Expression Profile