RNA id: TU319256


Basic Information

Item Value
RNA id TU319256
length 4054
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G281509
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60589657 ~ 60593889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatataaaacagATCACTCAAATGGACAACTTAAAAGACTGCAAATCAACATCTGGCTTTTGATCAACCACCTGTGAAATTGAATAATTCAATACTTTATCATAACTTGACTAACAAATGTTTTTTTAGGCTTCCTTTAGTTCAATGATCCAGTATGAAAATCAAAATAACTCGGTCTCAAAAGGAAGAAGATTTTGTCCTCAATTGCCCAAGCTCAACATATTCACAATCAAACAATTATCTAATATTAACTGAGAACTGActgcaataatgactgtatatgACTTACATACTTCAGAAGAACCTTTTTACAAGTGACACAATGCATTTTCAAAAATAGAACAAAATATTTGTCAAAATATTTTAACtttgatattcccccccccccccccccccccccacattgatGAAACAAGTTTCATTTTTCACCAGCTTATACAAGGACACTTACGGTCAGTTTATGTATAGGGGGTTACTGTGGTGGAACTGTCCCAAAAATTGGTTGCTTTTTTTCACAAAGATAAACAGAAATATGTTCAGTTCCCTCTGTATGGGGTTGAAGGTGCTGCTTTTGGGGTCTAAAACTTATATTATAGGTattatatacacagagtatacaaaacattaggaatacctgctctttccatgacatagactgaccaggtgaatgctttgatctcttattgatgtcacctgttacatGCACTTCAACTGTGGGAAGGACtggtgtcaacatgggccagcacccctgtggaacgcttgacaccttgtagtctTTGCCCTGTCGAATTGAGGCTGATGAGggcaaatgttttgtacactgtctctctaaggctgtgtttacacaggcagcccaattctgatcttctgCCCAATTATGTGCAATAGAGCAGATTTGATTGATCAAAATACCAACTGGTAGAAAAATAGAGTTGGGATGCCTGTGTATACGCAGTCTTAGATAGTCATGGAGAAATACACGCTGTGCTTTTGAAAGTGCTTTCTTTCCCTGGTGTACAGTAGGTCTCATTGAACACTAAAACCATACAATCAGATGACAATTTGACACAAAATGAAAATCGTTTTGGAACCACCTAATGATTGATTAATTTAACATGTCAACATTTCAGCTATATGCCACATGACAATGAATAATAATTTTATTAATTTAGGAGGATGATAATCCAGGTATTCTTCAAACTGACAGTCCAGTCCACAATACTGTAACTACTAGTTCATGTAAGGATGGGTGGACTTCATTACTGCAGGTCAAATCATAGCTGTGGTCCAATGCTATCCAAATCACTACTGAGAGAAATTCAAAAAATGGGTGGCAAAAAGCTATGGTTTCACAGAACATGAAGTAGCTGTGTATTGACAAACAATAAATTGCATTGGCAACCTAATGAAAAGAAAGACCTTCCATAAAACATTATAGACCAGTCTCCAGTCATGTAGCTATTACACCAGGTTGTCCAGAACAGAAAATACACAACTTACTTATAGCAGAGAGACCAACTTTCTATACATTGTACAGAGGGAATGTTTACAGAGCAAAGTTTCGTAGCTGTTGAATCCAGAACAAGGGTATTGTAACACCTAACATTAAATCTAATCTCTTAACCTATTGTAGAAATGTAACAAGTTAGAGAAGCTAGCATTTCATGTAAAACAATGTTGACAAGATTGATTTAATAGCTAGCATGTTAACTAAACAATTTAACTTTAAAAGACACATTAACAATAAAGCACAAAGGAGAGACATCATGCAAGACAAAAATGACTAAGGCAATATAAAAAGAATACTCAAATCAATTTGTCAAGGTACATTTCAAATGTGGCCGTTGTGTTTCGCTTCACATGCAACAATTATTCTGATTCAATATATACCATAGAAACCATTTTATGTAACCTCTGCCTTACTATTCAGAAAGTTATGCATTGTAATATCTATAAAGAAATAGAAAAtgtcattaaaatgtaattttgcAAGTCAAAGCTTGATGTTCAGAGCTTTATGGGGCACTAAAAGCCATCCTAACAATTTTACCAAGGTGAGAAACACAGAGAAACGCCTAATAATAAATATACCAGTATATTGCAAAATTAAGTTTGATTTAAAATATCTGTGCCATGAAGGTAGGAAATCAGAAGCGATGCCAGTGGTCAGTCTTTGCTGAAATACCAAGAGGGCTAAAATGTGTGAAAGGGAAGCGCTTATAAAAGGAGGGGAAAGTTGCACTTCCACTTAAAAATAAAGTAACCATTAACCTTGAATTGTATGTTTCAGAAAGTCCAGATGGAGCAGTAGTTTGACTTGACAGTCACCAAGAATGACTATCAACCATACGGTGGAAGCTAGAAATACTTCAAAAAGCACAGAACTAAtaaaatatacagttgatgtcggaagtttacatacacttagttgactgtgcctttaaacagcttagaaaactccagaaaatcatgtcatggctttataagcttctgatatgctaattgacataatttgagtcaattgaaggtgtacctgtggaagtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcagccaagacctcagaaaataaattgtagacctccacaagcctggtttatccttgggagcaatttccaaacgcctgaaggtaccacgttcaactgtacaaacaacagtacgcaagtacacacaccatgggaccacacagccgttataccgctcagaaaagagacacgttctgtctcctagagatgaacgtactttggtgtgataaatgcaaatcaatcccagaacagcagcaaaggaccttgtgaatatgctggaggaaacaggtacaaaagtatctatatacacagtaaaacaagtcctatatcgacgtaacctgaaaggccgctcagcaagaaaactgtcataaaaaagccagactatggtttgagactgcacatggggacaaatatcgtactttttggataaatgtcctctggtctgatgaaataataatagaactgtttggccataatgaccatcgttatgttctgaggaaaaagggggatgcttgcaagccgaagaacatcatccgaaccgtgaagcacgggggtggcagcatcatgttttgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatgacatcataaggaaaggaaaattatgtggatatattgaagcatcagtcaggaagttaatgcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattgggagtggccatcacaaagccctgacctcaatcctatagaaaatttgtgggcagaagtgaaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaatccacccaacttattgtgggaagcttgtggaaggctacctgaaacatttgacccaagttaaacgatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaataaatccctctctactattattctgacatttcacatccttaaaataaagtggtgatcctaactgacctaagatagggaatttttactctgattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtattttccaGGACAGGATCCTAAATAAAATGGAGCAATCGTTTGAATCTCTTACAGCTACATGTGTTAATGTACGATATAAAGTAGTGCTGAATGGGCAATTATCTTACAATGACTGACATACATTCTCCCATAATGAAATGTGTTTCGTCCTGTGGTCTTAACCTTGTACTGGAAAACCGGCCCGAAGAGTACCAACCCTCAGAGAATTTCAGGTATCCTATGACTGTTTAGATTAATACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319217 lncRNA upstream 46915 60542421 ~ 60542742 (+) True G281474
TU319204 lncRNA upstream 62828 60526530 ~ 60526829 (+) True G281461
TU318937 lncRNA upstream 174472 60414961 ~ 60415185 (+) True G281219
TU318930 lncRNA upstream 183133 60406298 ~ 60406524 (+) True G281212
TU318921 lncRNA upstream 197288 60392121 ~ 60392369 (+) True G281203
TU319260 lncRNA downstream 4921 60598810 ~ 60599890 (+) True G281512
TU319267 lncRNA downstream 9114 60603003 ~ 60603289 (+) True G281515
TU319269 lncRNA downstream 11810 60605699 ~ 60606292 (+) True G281517
TU319288 lncRNA downstream 21703 60615592 ~ 60615814 (+) True G281525
TU319238 lncRNA downstream 25183 60619072 ~ 60621130 (+) False G281492
XR_005051347.1 mRNA upstream 206305 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 303577 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 303580 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 319758 60267642 ~ 60269899 (+) True LOC110505381
XM_036974796.1 mRNA upstream 537363 59870559 ~ 60052294 (+) True erbb4b
XM_021597524.2 mRNA downstream 40650 60634539 ~ 60654313 (+) True tgfbr2l
XM_036974822.1 mRNA downstream 737470 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 737654 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 881987 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 996169 61590058 ~ 61647253 (+) False LOC110504376
TU318844 other upstream 299090 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 535240 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 535240 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2799325 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3324765 57264567 ~ 57264892 (+) True G277296
TU319365 other downstream 146350 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 297635 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 297635 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 439877 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1363499 61957388 ~ 61961475 (+) True G282707

Expression Profile