RNA id: TU319675


Basic Information

Item Value
RNA id TU319675
length 246
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G281872
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60616186 ~ 60616431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggactgatgtcaacatcatactttgaAAATATAATATAACgtgattttatctgtggccaatgaccttgagccttcttggatgggcacttctaatggaCATCTATTGCAGAATTTTAGAGCTATCCCTGTAGTTTTTTGGGTGaaatagtgtccccatgagtgagagaacactgagccaatcacagcgcaactagagaagtttaccaacccctacactctgtattttccgctggctgccccaccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319633 lncRNA downstream 75841 60540132 ~ 60540345 (-) True G281832
TU319132 lncRNA downstream 207830 60408064 ~ 60408356 (-) True G281393
TU319131 lncRNA downstream 208247 60407197 ~ 60407939 (-) True G281392
TU319129 lncRNA downstream 210126 60405795 ~ 60406060 (-) True G281390
TU319115 lncRNA downstream 235001 60380979 ~ 60381185 (-) True G281376
TU319665 lncRNA upstream 42835 60659266 ~ 60660495 (-) True LOC110520306
TU319749 lncRNA upstream 275412 60891843 ~ 60892823 (-) True LOC110520309
TU319993 lncRNA upstream 413955 61030386 ~ 61030761 (-) True G282125
TU320047 lncRNA upstream 492697 61109128 ~ 61110355 (-) True G282179
TU320074 lncRNA upstream 526915 61143346 ~ 61145221 (-) True G282206
XM_021597522.2 mRNA downstream 974 60607110 ~ 60615212 (-) False LOC110520303
XR_005051348.1 mRNA downstream 974 60607110 ~ 60615212 (-) True LOC110520303
XM_036974814.1 mRNA downstream 16080 60593527 ~ 60600106 (-) True znf148
XM_021597521.2 mRNA downstream 16083 60593527 ~ 60600103 (-) False znf148
XM_021597519.2 mRNA downstream 26847 60560430 ~ 60589339 (-) True slc12a8
XM_021597526.2 mRNA upstream 4055 60620486 ~ 60633875 (-) False snx4
XM_036974816.1 mRNA upstream 4055 60620486 ~ 60633884 (-) True snx4
LOC110520306 mRNA upstream 42815 60659246 ~ 60682924 (-) False LOC110520306
LOC118944682 mRNA upstream 70023 60686454 ~ 60689464 (-) True LOC118944682
XM_021597527.2 mRNA upstream 93523 60709954 ~ 60888262 (-) False LOC110520307
TU315276 other downstream 3027003 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 3212611 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 3318424 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 5204699 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2098144 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4353118 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4397828 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4438269 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4438269 65054700 ~ 65075985 (-) True G286638

Expression Profile