RNA id: TU319239


Basic Information

Item Value
RNA id TU319239
length 1932
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G281492
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60619072 ~ 60621633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGAATTCTTCCTATTTATTAGTGTATTTTTGGCACAATGATTACAACCTTACAACCGCATAAACAGTGCAATTTCCTGCCAGAGCGCTCTGATCTCATCCCAAATTCACGATTAACATTGCACCTCCTCCCCTAGCCCTTAGAGTGAACAGAGATGCAAGAGGCCAGGGGTTGTGTCccaaattgcacccTTTCCTATTAGACCAAGGCCcttagtgctctggtcaaaagtaatgcactatatagagcATAGGTAGTCATTTGGGCTGCATCCCCAGTACACGCACAACACTACCATAAGTAAATTATCACATCCTGTCTTTCCTGTGTGACCTTCCTGTTCCTTTGGCTAGATTTATCAAAACACTGACCCACCCACTCTTCAGAAATGACAAGCCTGCCATTCATCATAGTGGTTACTTAAGGCCAAGTGCCTGAGTATGTTTTGAATGGCAAAGTACAGTAAGCCATTTAAATAGGATGGTTACATTCTTAATGTTGTACAAAAACATCTGAAAAGGTTGAACACCTTATTTTAGTATACTGGGACAATGCACTGAGAGGGTAGAAAAGACAAAGGTCAATATACCAACCACAAGTATAAAATTGACGAAAACAAGTGAATTATGCATGTAAAATAAACGGCAAGCACATTCTTATAGGACTAGTCTAATTGCCTCCTGCctccattgtaaataataatttgttaattGACATGCATGGTTAAAGGttcaataacaaaaaaatctaaataacagTTGTAATCTTATGTAGAGTTGCAAAATTCTTGGAACTGTCAATAAATTCTCTGGTTTTCCATTAATCCTGGTTTGAGAATTCCGGATTTCCTGCTTGTTCCCCTCCTGATTCTTGGAATCCTCCAGCCCGGATTTttgggaaaaccagggaattcaTAGAAAATATGCAAGACTAATCTTATGACGTGATTTTGAACATTGTGTAAAAGGCAGAATAGGAAAATTGGATTCAGTCCACATTTCTTGGCATCTCTATAAACAAATTAATATAAGTGCTTGGTGAATAACCTTAAATCAGCATTTAGGCGAAAATACATTTGtatgaaaaaacacatttgtCAGACAGTCACTGAGAAATAACTGCAATTGCAAGTCGATCAAATCAAGGCAGCTAGCAATCGGACATGATAAAGATATAGAAAAATAATTCTTATTTATTTGTTCTTGAGCGTACAGGATCAATGTTGCCATAAGGATCATAGGGACTGTGTCCAGGAATCTGTCCCAAaaagcaccctgttccctatatagtgaacagaccccacagggctctggtcaaaagtagcacactatttagggaatagagtgcaatttgggatgcatccccAGGAGGAGTCCCCTGAAAAGAAGCATGTTCTGTTTTGCTGTTTGTTTGGAGGGCCTGTTTCGGCCCTGAAGATCACATCTTGTTGAAACACTCCTTTGCGTTGGTCCACACTTGTattccCTTTTTACACCTGCTGATCTGCATGATTGCATAGCTAATCAGGGCCTCCTTCAGGTCCCGGTCCTTTTGGTCTTTAAAGTGCTCAATGTCTATCCAGGCAGTCTTCACAAACTCATCGCTCTCGGTGTTCTTCTCTttcacagcctcctctccctcctctatctgcTGTTCTAACACTTGTAACTTAGCCTCCCTCTGCTCTGCAGTCTCCTGGCCAAACAGCTTACTGGTCATCCCCTTCAGTGAGAACGTCCGCACAGTCTGAACACAGGGAAGGAAAGCTCAACATTCCATCTGGTCATTCTTTAAGGTTTGGATAAGCTTCACAGCAACTTTtgactaaatgtattttatttatgtgCTTGCTATCTATTGCCTCATTATTTGCTGAGGAGCTCCATGTGTCTCTTTAGAAACTGAGGctatgtccaaaatggcaccctatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319288 lncRNA upstream 3258 60615592 ~ 60615814 (+) True G281525
TU319269 lncRNA upstream 12780 60605699 ~ 60606292 (+) True G281517
TU319267 lncRNA upstream 15783 60603003 ~ 60603289 (+) True G281515
TU319260 lncRNA upstream 19182 60598810 ~ 60599890 (+) True G281512
TU319256 lncRNA upstream 25183 60589657 ~ 60593889 (+) True G281509
TU319302 lncRNA downstream 12451 60634084 ~ 60634379 (+) True G281538
TU319349 lncRNA downstream 101949 60723582 ~ 60727146 (+) True G281579
TU319459 lncRNA downstream 227549 60849182 ~ 60923455 (+) True G281680
TU319542 lncRNA downstream 331507 60953140 ~ 60955335 (+) True G281754
TU319782 lncRNA downstream 344695 60966328 ~ 60966638 (+) True G281957
XR_005051347.1 mRNA upstream 235720 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 332992 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 332995 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 349173 60267642 ~ 60269899 (+) True LOC110505381
XM_036974796.1 mRNA upstream 566778 59870559 ~ 60052294 (+) True erbb4b
XM_021597524.2 mRNA downstream 12906 60634539 ~ 60654313 (+) True tgfbr2l
XM_036974822.1 mRNA downstream 709726 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 709910 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 854243 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 968425 61590058 ~ 61647253 (+) False LOC110504376
TU318844 other upstream 328505 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 564655 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 564655 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2828740 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3354180 57264567 ~ 57264892 (+) True G277296
TU319365 other downstream 118606 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 269891 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 269891 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 412133 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1335755 61957388 ~ 61961475 (+) True G282707

Expression Profile