RNA id: TU319459


Basic Information

Item Value
RNA id TU319459
length 7557
lncRNA type read_through
GC content 0.41
exon number 2
gene id G281680
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60849182 ~ 60923455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGTCATACTTTTTTGAGATCAGTCAAATTGGTAAATCTTTTATAAGCCCAAATATACAGTATTCATTAAGAATACAATTGCCTCAAACATACAGTGAAACATATATTTACAGCACATataatgtatataatgaacatatcctttttaaaaatgtaattttaCAGCCAACCCCAAGGCCTTATTTTGAATGGATGTACTTTGCCACTGTAGACATAATGAAAAAATAAACTCTACAGTAGTACATTCAATATTAGATTAAAATTGTGTTAGATATTGCATTTTTTTgtgtacaatatatatatttttaaaatcatTAACCAAAAGAAATAAAATATTATCAGAAACTCATTCACAAAGAAAATGTTTAAATTCTGCACTTATTGATGATGCTGTACTTATTGTACAGCATCATGTTAAGATGGAACTATCATGGTTGCATTGATAATTGATAATTTTACATGCACTTCTTAAAGCTGGAACCCTTAATGGTGAAACTGCCACATCCGTttgggatattacaacaacaacgtTACTGAAAACAACGCCCACTGTTTTTCCTGACATCATTGCACGCGCGATAGAACAGCAGAATATGAACCGTAATTATTATTTTTACCACACTGCTTTACGCACCTCACCTCAATTTCGGCAACAAAATAAAAACTATAACAAAGGTGCTGGGGCGGACAGTCATGCTGTTTACCCTAATGTAAATTCCAACTTCAACACTACACACTGGGAATTGGATCCCCAGttctccattgagcatgctttttcGTTCAGGAGTACTCTTGATCTGGGTCCGAGAAATCCCCAGTGATCAATTAGATAAGCCCCAGAGTATTTTTGTATTTGTTATATTATGTATGACTATATATTCAATTATATGATTAATTTGAAATATTAAAACATTGGACATTTTGGGCCTAACACGAATGTCTTGATAACAATGTTTTGCTTACACATGGGTGGTAAGTATTCATACACGTTGTCATGTTAAATAAAACTATAGGCATTAACTTTTGTTTTACTATTTTGAAAAGCAAACATTCAACATTCAAACATACCCAACATGATTATATAACATTTATAATTACTCTTATGTGTGACGTAATTACACACTATACACAATAAATAAGATCTACACCTAATTTCAGAAAACCTTTTGCGTGTATCTCAAAATAATGAACAAAAGCTACTTTTCGAACATACAATTGCTTAAATGAGTTCAACATCCACATGAAAACAAATTACATGAAGAGATTAGAACACTTTCAACAAAGCAGTTGTTTCAGTATATCCAGATTTATTTTGGATGAGACACTTGTACTCTCCAGCATCATTTTTAGTGACATTTGTTATGATCAAATTAAAATGTCCAGATGCTTTCTCTTGGATCATGTACCTAGTTTCTTTCACAGGATCCCCGTCTTTGTACCATTCAGCAGTGGGATGAGGTTTACCATTAACTAAACACTGGAGGACCACTGGAGTTCCTACTGCTGCAGTGACGTTTGTCAAAGGAACAATACATTTTGGTGGAGTTTCAGTCATTTGAAACTGGAAACTACACAATTCCGATGACTTTCCTTTGAATTCTATTTTATCATCTTTGGCGGGCTCTGCGAAAACATCAAAATTTATACTGACATATTTCTCTCCCTGCTCGCTCATCTCATTGTCTGTCATGGCTACGAGTCTAACAGCCTTTTGTGATTCATCAGCTTCCTGCTCAAATTCAAATTCCAGCTCTATTTCTGATGCCTGCTCACCGTCAAACTCATTCCCAACAACCAAGTCAAACTTTTGAGGCTGAACTTTAGCACTACCAAGAGACACAGCTGTCAATTCTCTTCCTCTTGTTTTCCCTATAAAGCTTTTAGGATTCAACACAAGAAGAGATGCCCTGCAAAGAGTTTCCCCAACCACATTGATGGCCCTGCAGGTGTATATTCCACTATCATGAGCGTTGGCTTTCCTGATCTTTAGGAAATGATTGTCTCCATCAGATGAGTACAAGTATTTCTTGTTATCGTGAGGGATCTTTTTGTTACCTTTAAACCATGATACTATGGGAGAGGGAATTCCCATCAGAGAACACTCAAACATTACAGTTGTATTTTCGGGGGTTTCCATATCACAAATTGGGTTGATGAAGCGTGGTGGCATTTCTGTAACCTCAAAAGCTATTTTCAAATCATCCCTTTCTTGCGTTACAAAGTCAACTCCACTCTCCTCGTACATACTCGGGAGAACATCGAGTGATATTATCATACTTTTATTGTCAGCGGTGTATTCAGGGACGGTAATTATCTTCACCTGTCTCTCAAACTCTTTAACCTCATTTTCATCCAGCTCCACCTCTAATAGAATCTCCTGAGGTGAGCAAGACCTTGATGAGTCATCATCTTCCTCAACATCAAACTCCATCACATGCTGGTGGGTGACTGCTGGTGGTGGGGGCATATATCTGGCCTCGTTTGATATAACTACAACTAGTGCAACGCTTTTTGCCTCTCCTACATAGTTAACAGCTTCGCAAATATATTCACCTTGATCAGCTTTCGTAATGTTTTGAATAAAAAGTGTGATATTGTCACCATCTCTATCCATTGTAATCCTTTCTTCTGCAACAAGCTGCGTTTTGTTTCTAAACCACTTCACTTCAGGTGAAGGCAACCCAAATACCTCAGCGTAAAACGATAACGAATCTTGTTCAAAAACTCTCCTTTTGGTGAGAGGTTTGAGGAAAGCCGGAGGGATTCCCTGgactttttcctgtagtcctccAAGGCCAAGCGCACGCTCTGAGAGGAAGATTCCTTCCTCTAAGCTAAATGCAGGTGGAGTTGTCTCAATGCCCTCATCATCAGGTGACCTCAAGAACTTAGCAggagaaaataacctctcactgaAGTCAGTAGATGTTCTTTTATGTTCAAGAGGAGAGAAGGCATACTCATTGGGGGTCATATAACCTGCTGGAGTTTCAGTTTCAGGAGTGTGGAAAGATTCGGGAGATTTCGGGAGCTGCGAAATTTCAGTTGAAGAAGCTGGCGTATAGAACCGCTCGATTTCTGTTAATTCCTCACTAAATGTGCTACCACACTCAATGGACATCTCCGACTCTGGTGATAGGGGTCTGCCCCACTCAGTTGGTGGGTTGTAGTAGTCATAAACAGTACTGAAGGTCACTGCCTCCTCTTCAAGTGAGGTCAAACCTGTTGCACCTTGACTGTCAGCCGTACTTAGATAAGCACTGTCTGGTTTAGCCTCTGCTTGCTGTTGTGAACCTTGTGCAGCAAGATCATCTGTAAAACCATCTTCTTTGAACTTAATACTCACTGATTTTGAAACCTCTGAAGGCTCACCACTCTCAGCATCAGCATGTTCCTCGTTTTCCTCTGCAGTTTTTTCACTAACAATTTCACTACGTGCCCCACTAACACTGACAAATGCGCTACCCTTTGAGCGTTCAAAGATAGACATATTTTCATTCATATGAGTCATGTCCTCGCGATCAGAAGACTCAGTGTCCAATCTCTGAACTTCTGGAGCAGCAAATGAGCCAGAGAATCTTTTTGGCTTTACAACCTCATTACCGACTGACGCTGAAACATCATCTGGGATCTCCGACACTGGGACTTTCTCACAAGGAAGGAAGCTACTGCCAGTACTAACAAATGCACTTTCACTGTCCTCTTTCATACTTTCATCTATCACACCAGGTCCTATAATTTCTGGAGAAGGGCTAGTCCTTACTGCCTTAACTGCCTCAGGTCTGACCAGTTTTGGTGACTCCTGCACCTCTGCTACACTTGAGAGGGGAACAAAGTGTTTTAGGTCACCATGGGTGTCAATTATGCCAGCTTCCTCAACAGTTTCTCCTGAAATCATACAGATTTCCTTGTCTTCCTCCTGAGTAGTAGACATGGTCTGACCATGCTCAGGGGCACTTTTTGGAGAGACTGTCTTCGCTTTGGTCGAAATTTGTGTATTACTACCTTCTAGTAAGACAACCTCTGGTCCACTTTTGGGGGAAATTGACCTTTCTCTCGAAATGTGTGTATAACTACCTTCTACTAATATAGTGTCTTGTTTGGCCTGCAGTGGAGTTCCTTCCACAACATTAGTTACCAATGACATATCATCCTGTTCAGGATGGATTGATACTTCTGGGATATCCTCAGGGAAATATGACTCTGTGGACTTTTTCACTTCATGAACAGTGGTATCTGACAATGCAGGTGCCTCTGACAACGCAGGTGTCTCAAAGGCCTGCTTAATATGTGACGTTTCGACTACTGCAGCAGATGATTGCCGACCACACCCAGTAACAGTAGGTGCTTCTTTTGAAACACTTTGCTTTGGTTTAGTTACTTTTGGAATAGTCTTTTTAAGGCTGTGAGAACCTAAAGTTCTGTCCAAAGTCAGCATCAATGCCTGGTCAGTAATATCACCAGGATCACTCAGAGGGGACTGCCTCAAATCTTCTGAATTTCCAGATAGTATATATTGTTCCCATTCACCAGCCATGGCTGCTTCTACCTCAGAAGATCCAGCAATAGCAACAGCTGGTTGGAAGTACACATCAGAACTGCTTTCAACCTTACTGGTTTGGCCTTCTGAAGAGCTTATGTTCTCAGATTGACTGACTACCTTAGCGGCATCACTCGGATCATAGGAGAATGTGAATTTGTGTTTCATAGGATGGGAACTGCCATCATCCTCAGACATATCTGTGTCTTTTTCAATCATTTCGAATGGGACTGGTGTTGGAGCAGTGATCCTGATCTCGACATTAGAAGTAGAATATTGTGAGTCTGAAGCACGAGGTCTGTACAAGACAGCCCGAGGCACCTGTAGAAAGGATTTCTCATCCGTTTCAACGTCTATGTATGATTCAAGTTCCTCGTCCATCATTTGGTCAACATCTTCTTCACTCATTTCATAATCTGTTGTCACTTTCACTTTACGCGAGGCTACCGGCGATGCTGATTTTGTTAATTGCTCACTCTCAGTAACTTCGAGTGTGGCAGAGGAGGTTGCCTTTCCAAATGTATTAGTGATAACACAACTAAATGTCCCCTCATGGTATATAGTCGGATAGTAGATGGTTAATGTGGTTTCATTCAATTTGATGAGAACATCAAAGTCTGGGTTTTGACTGATTGGATGGTCATCTTTGAGCCAAGTGACAGTTGGTTGAGGGTCTCCCCGGAAACGACATTTAAAGTCTGTCATCTCTCCCCTCTTTACTTTCATGGATGAGATTTCTCTCACAAAGATAGGTAGTGATGTTTTCGGTGAAGTCTTAtcaaattcctttgtcctctgATGCATGTCCATTTGGCGAAGGTCATCTTTTGATAGCATTTCTCTGTGTTCTTCTTTCCTCTCTGTGGTCCTCATAGACACTTTTTCTTTTTCATCAGGTCTTAAGTCGGATTCCCAATTGGAAGGCCCTTCTGCACCAACTTCGGCTTGAGAACCATGCTGACCAATGTGATGTTCTCTCAAAGGTGAACGGCCTCTTCTAGGTGAGGCTTCTCTACCAGGTGAGGCTTCTTTCACAGGTGATCGAACTCTGCCAAGTGAGCGTTCTCTGCCAGGGGAGGGCTCTCTACCAGGTGAGGGTTCTCTCCCTGGTGAGGACCCTCTAACTGGTGAGGACCCTCTCACCGGTGAGTGAAACCCAAGTGACATTTGATGAAACTTCTCTATATGATGAGAAACAGGTTCATAAGAAGGACCGTCATTGGCATCATCTCCACTGGCATAAGTTCTCTGACGATGGTGTTGTGAAAGTTCAGCCATAGCCCAATCCTCTTGAGAGACAAGCTCACCAATTCGATGTTGTCTCATAGGTGAGGATTCTTTCACAGGAGAGCGCTCTTTAATTGAAGAGCGTTCTTTCACAGGCAAGCGTTCTCTCACAGGTGAGGACCCAAATGACATTGTATGAGACTTCTCATTCTGATAAGAGGCTGGTTCAAAAAAGGAACGTTCATGCTGACCAATGTGATGTTGTCTCATAGGGGAGGGTTCTCTCACAGGTGAGAGTTCTTTCACAGGTTCAATAGAGTGACCTGCATCGGGTCCACTAGCATCGGTTTTCTTTGGGTGTTGTGAATGTTCAGCCAAAGCCCAGTTAGACTCTAATTCAACAGCTTCTTCTTGTTCGGTGAGAACGTCTTCTTGCCATTTTAAGATGCGCTGAGCCAAAGCTTCCTCTTCGCTCACAAAATACTCACTTTCGGTCTGCAACCTTGTTTCATCAATAACAGTTTGTGGAGGAGGGGGCCACTGGAAACTTTCATCTTTGAAATTATGGATATCCTTACTCTGGGACTTTTCCTTTGCTGTCCTTTCTGGCGAAGATCTTCTTTCATATCTGTAGTCATGAGGGGCATGCTCACTCAGGAACATTTCCTTTGTCATCTTTTCTGGAGTTGGCCTTTTTGGGTCTTCATGGGCTGTATCATCACGGAGAAGCATTTCCTTTGTTGTATTTTCTGCAGAAGACTTTATACTTACATCTCTGTACTCATGAGGTGAGGTGCTGTCATATCTATATTCAGGAGCAATATCCTTCTCAGTAAGGACATGTTTGTTTACTGTCTTTTCTTGTGTGGACCTTCTCTCATCTCTGAAATCATGAGGGACATCCTCAGTCAAGAATTTTTCATAGTCTGTCTTTTCCGGGGAAGGCTTTCTTCTTCTCGCTGAATCTGCCTCCGAGTGAGTGGTTGATCCAAGAGCAGTGCCCTCAGCAGCCATTTTTGATTCAGACCTTTTTCTAGCAACATAGTGTGAGTAATCCGCACCAACCCAATCAGAATCCAAGTCAACAGCTTTCTCCTGCTCAGTCAAAACGTCTTGCTGCCATTTCATGATTCGATGTGCCAGAGCCTCTTCCTCACTCCCAAACTTTTCACTTTCGCTCTTTAATTCATAAATATTTTCCCGGGATAAGTGGAGCTCTTCACAGGACAAGTCAAGTCCTTCCTGGGATACATGGTGCTCTTCTCGTGTTTTCTTTTCACTGGCACGCCTCTCTCTTGGGGAATGGGGCAAATTCTGTTCACTGTCACTCTTCAACCCATAAATATTCTCCTGGGATAAATGGTGCTCTTCTCCTTTTTTGTTCACACTGGTACGTCTCTCTCTTGGGGAACGGGGCAATTTCTGTTCACTTTCACTCTTCAATCCAGAAATATTTTCCTGGGATAAGCGGAGCTCTTCCCcttttttgtttaatttatgtttgtaagtttgtttgaaatgtatgtattgagagacgcaatgatggggatggggtgagagaagcaccgagcgggaagaggaaaatggtgtacgtatgtatgggtgtgtgtgatatgtatgtatgtatgtgtgtctatgtatgtgtgtatgcatatatatgtgtatatgcatgtgtgtatgtgtatatatatatgtttatatatatatgcgTAGGTCTGTGTAAGTGAGTGCTGTTttcttttgtgttttttttggtgtgctttgtctctgttgttgtatctcttaat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319349 lncRNA upstream 122036 60723582 ~ 60727146 (+) True G281579
TU319302 lncRNA upstream 214803 60634084 ~ 60634379 (+) True G281538
TU319239 lncRNA upstream 227549 60619072 ~ 60621633 (+) True G281492
TU319238 lncRNA upstream 228052 60619072 ~ 60621130 (+) False G281492
TU319288 lncRNA upstream 233368 60615592 ~ 60615814 (+) True G281525
TU319542 lncRNA downstream 29685 60953140 ~ 60955335 (+) True G281754
TU319782 lncRNA downstream 42873 60966328 ~ 60966638 (+) True G281957
TU319783 lncRNA downstream 44114 60967569 ~ 61023059 (+) True G281958
TU319795 lncRNA downstream 63083 60986538 ~ 60987139 (+) True G281970
TU319802 lncRNA downstream 68451 60991906 ~ 61027640 (+) True G281976
XM_021597524.2 mRNA upstream 194869 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 465830 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 563102 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 563105 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 579283 60267642 ~ 60269899 (+) True LOC110505381
XM_036974822.1 mRNA downstream 407904 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 408088 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 552421 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 666603 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 686406 61609861 ~ 61647253 (+) False LOC110504376
TU319365 other upstream 91832 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 558615 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 794765 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 794765 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 3058850 57789734 ~ 57790332 (+) True G277973
TU319833 other downstream 110311 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1033933 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 1270149 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 1444159 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1782876 62706331 ~ 62706970 (+) True LOC110504398

Expression Profile