RNA id: TU319500


Basic Information

Item Value
RNA id TU319500
length 2235
RNA type TUCP
GC content 0.41
exon number 2
gene id G281714
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60891524 ~ 60893778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTAGATATCAGAAGCATTACTTTATTTGAAAGACATTGATATTTAAGGGGACTTGGCTAACACAATTTACCATCATATCTCAAAGATTGAGACTTTTATAGGAAGggcatacagtgctttcagaaagtattcagaccctttcccatttcccacatttgttacgttacagccttattctgaaatagattaaacatgttttccctcgtcaatctacacacaataccccataatgacaaagcgaaaacaggtttttagacatttttgcacatttatacaatttaaaaacagaaataccttatttacataagtattcaaaccctttgctatgagactcgaaattgagctctggtgcatccagtttccattgatcatccttgagatgtttctccaacttgattggagtccacctgtggaaaattaaattgattggacataatctggaaaggctcacacctgactacataaggtcccacagttgacagtgaatgtcagagcaaaaaccaagctatgaggttgaaggaattgtccgtagagctctgagacaggtttagcttgaggcacagatttggggaagagtaccaaaacatttctgcagcattgaacacagtggcctcaatcattcttaaatggaagaagtttggtgcagcactgcaccaatcaggcctttatggtagagtggacggACAGAAGCCAGTcttcattaaaaggcacatgacagcccgcttggagtttgccaaaaggcacctaaaggactgtcagaccatgagaaataagattctctgggtctgatgaaaccaagattgaactctttggcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctaagttGAAGAATGGTCATGGCAGCATTGTTCTGTAggggtgtttttcagctgcaaggactggggcgaaggtccaccatccaacagaacaacgaccctaagcacacagacaagacaacgcaagagtggcttcagaacaagtggctgaatgtccttaagtggcccagccatagcccagacttgaacccgatcaaacatctctggagagacctgaaaatagctgtgcagcgacgctccctatccaacctgacagagcatgagaggatctgcagagaagaattggagaaactccccaaatacagatgtgccaagcttgtagcatcatacccaagaagactccaggctgtgatcgctgccaaaggttcttcaacaaagtactgatgtaaatgtgataattcagttttttaattttttggggggtgcaaaaatgtctaaaaacctgtttttgctttgtcattatggggtattgtgtgtacaatgatgatgaaaaaaactaaatgtgaaataaagtcaaggggtcttaataGTTTGCGAATGCACTGTAATACAGTATTGAAACTGAAGAAATTGCTAAATTACTGTTTTTAGCATTTATTAATAAATATACCGTATTCTCTCATTAATTGTAGGACATTTGGTCATAGAGGCACAGAATCAAATGCGCTAACTTAGATAAAAAGCAGATAAAATATAAGTATAATATTAAGGATATTTTGACTGAAGTTGAGATATAATTTGGTTTTATGCACAAATTAAACAATTGTCTAAACTACAAATAAATTAAGCTCACATTCATACACACAGTTGGTGTTTTGGGTGTAGTATGTAAGTGGTTATTGGGATCAGGTTCAGAAGTGACACCTCAGGCAGCCTTACAGATTTCACAGTTAAAATGAGGGTTATCCAGTGTACTACTGTGCAACATCAACACTACTTTCCATTACAGTGAGAGTGGAAAAGGGTCTGGCAGTGAAAAGCTTGATATAATATTTTGTATTACTTCATAACAGCAATGAGTACAGGAGGTACAGGAGAAGACACAGAGTACCAAAACAAGTGTGCCAGTCCAGCTTGAGAAGAGCGTAGTCGGGTTCGGGACAGCTGTTGTTACGTGCTTTCACCTGAAGAGCGGCACTAGAGGACAGGGTGCCGCTTGGGTTGACGGCCCGGCACGCATAGAGGCCTGCGTCGGTCTCAGTGACCTTCTGTACGAACAATGCATGTTTGCCTTTTTTTTGTGACAGCTCTATGTGCTCATCATTGGTCAGTTTCTCTCCATTCTTGAACCTGAAGCAAGAAGTGAATTATAACACAAAACACAATCACAACACAAGAAAGACACAAATCACATTCCTATTTATCAGAGGGTGAGCTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319349 lncRNA upstream 164378 60723582 ~ 60727146 (+) True G281579
TU319302 lncRNA upstream 257145 60634084 ~ 60634379 (+) True G281538
TU319239 lncRNA upstream 269891 60619072 ~ 60621633 (+) True G281492
TU319238 lncRNA upstream 270394 60619072 ~ 60621130 (+) False G281492
TU319288 lncRNA upstream 275710 60615592 ~ 60615814 (+) True G281525
TU319542 lncRNA downstream 59362 60953140 ~ 60955335 (+) True G281754
TU319782 lncRNA downstream 72550 60966328 ~ 60966638 (+) True G281957
TU319783 lncRNA downstream 73791 60967569 ~ 61023059 (+) True G281958
TU319795 lncRNA downstream 92760 60986538 ~ 60987139 (+) True G281970
TU319802 lncRNA downstream 98128 60991906 ~ 61027640 (+) True G281976
XM_021597524.2 mRNA upstream 237211 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 508172 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 605444 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 605447 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 621625 60267642 ~ 60269899 (+) True LOC110505381
XM_036974822.1 mRNA downstream 437581 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 437765 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 582098 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 696280 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 716083 61609861 ~ 61647253 (+) False LOC110504376
TU319365 other upstream 134174 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 600957 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 837107 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 837107 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 3101192 57789734 ~ 57790332 (+) True G277973
TU319833 other downstream 139988 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1063610 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 1299826 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 1473836 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1812553 62706331 ~ 62706970 (+) True LOC110504398

Expression Profile