Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00029449 |
| length | 692 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.43 |
| exon number | 4 |
| gene id | XLOC_014925 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 34073877 ~ 34089305 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008380 | RNA splicing | biological_process |
| GO:0005785 | signal recognition particle receptor complex | cellular_component |
| GO:0005575 | cellular_component | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-041114-42 | Predicted to act upstream of or within RNA splicing. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor). |
| ensembl_id | ENSDART00000164619 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030295 | lncRNA | downstream | 294243 | 33782783 ~ 33786703 (-) | True | XLOC_014920 |
| TCONS_00029432 | lncRNA | downstream | 805957 | 33270577 ~ 33274989 (-) | True | XLOC_014917 |
| TCONS_00029429 | lncRNA | downstream | 812820 | 33258572 ~ 33268126 (-) | False | XLOC_014917 |
| TCONS_00029413 | lncRNA | downstream | 1448808 | 32624756 ~ 32632138 (-) | True | XLOC_014907 |
| TCONS_00029371 | lncRNA | downstream | 3115285 | 30962723 ~ 30965661 (-) | True | XLOC_014885 |
| TCONS_00030296 | lncRNA | upstream | 98887 | 34188192 ~ 34230285 (-) | True | XLOC_014927 |
| TCONS_00030297 | lncRNA | upstream | 192581 | 34281886 ~ 34283008 (-) | True | XLOC_014928 |
| TCONS_00030298 | lncRNA | upstream | 571407 | 34660712 ~ 34674853 (-) | False | XLOC_014929 |
| TCONS_00030299 | lncRNA | upstream | 571407 | 34660712 ~ 34674876 (-) | False | XLOC_014929 |
| TCONS_00030300 | lncRNA | upstream | 571407 | 34660712 ~ 34687530 (-) | False | XLOC_014929 |
| TCONS_00029442 | mRNA | downstream | 17379 | 33888548 ~ 34063567 (-) | False | XLOC_014923 |
| TCONS_00029441 | mRNA | downstream | 17379 | 33888548 ~ 34063567 (-) | False | XLOC_014923 |
| TCONS_00029440 | mRNA | downstream | 69606 | 33887589 ~ 34011340 (-) | False | XLOC_014923 |
| TCONS_00029445 | mRNA | downstream | 84669 | 33963739 ~ 33996277 (-) | True | XLOC_014923 |
| TCONS_00029438 | mRNA | downstream | 230745 | 33836439 ~ 33850201 (-) | False | XLOC_014922 |
| TCONS_00029450 | mRNA | upstream | 2247 | 34091552 ~ 34117056 (-) | False | XLOC_014926 |
| TCONS_00029452 | mRNA | upstream | 602340 | 34691645 ~ 34742440 (-) | False | XLOC_014930 |
| TCONS_00029453 | mRNA | upstream | 602341 | 34691646 ~ 34742440 (-) | True | XLOC_014930 |
| TCONS_00029454 | mRNA | upstream | 662382 | 34751687 ~ 34873566 (-) | True | XLOC_014931 |
| TCONS_00029455 | mRNA | upstream | 824550 | 34913855 ~ 34927201 (-) | True | XLOC_014932 |
| TCONS_00029446 | other | downstream | 102952 | 33977878 ~ 33977994 (-) | True | XLOC_014924 |
| TCONS_00029444 | other | downstream | 120220 | 33956826 ~ 33960726 (-) | False | XLOC_014923 |
| TCONS_00029443 | other | downstream | 165082 | 33888604 ~ 33915864 (-) | False | XLOC_014923 |
| TCONS_00029439 | other | downstream | 230727 | 33847134 ~ 33850219 (-) | True | XLOC_014922 |
| TCONS_00029437 | other | downstream | 245578 | 33833520 ~ 33835368 (-) | True | XLOC_014921 |
| TCONS_00029451 | other | upstream | 3267 | 34092572 ~ 34095677 (-) | True | XLOC_014926 |
| TCONS_00029472 | other | upstream | 1331530 | 35420835 ~ 35420951 (-) | True | XLOC_014942 |
| TCONS_00029473 | other | upstream | 1332372 | 35421677 ~ 35428894 (-) | True | XLOC_014941 |
| TCONS_00029481 | other | upstream | 1373077 | 35462382 ~ 35465580 (-) | True | XLOC_014944 |
| TCONS_00029490 | other | upstream | 3138605 | 37227910 ~ 37228025 (-) | True | XLOC_014951 |
