RNA id: TU319833


Basic Information

Item Value
RNA id TU319833
length 2522
RNA type TUCP
GC content 0.44
exon number 2
gene id G281996
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61033766 ~ 61037105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACAAAATgtttaacaaacaaacaaatgataATACAACCACATATATCAAATAAAACTTAATTTATGCCTCAAACACATCATAGAAAATCATCTGAAAATAAATACTGTACATGTTtacagagagcagagggcagggagcagggagcagagggcagggagcagagagcagagggcaggGAGCAGAGGGCAAGGAGCAGAGGGCAGGGAGCGGGGAGCAGAGGGCAAGGAGCAGAGGGCAGGGAGCAGGTAGCAGAGGGCAGGGAGCAGAGGGCAGGGAGCAGggagcagaggGCAAGGAGCAGGGAGCAGAGGGCAGGGAGCAGAGGGCATTGAGCAGAGGGCAGGGAGCAGAGGGCAGGGAGCAGAGGGCAGGGAGCAGAGGGCAGGGAGCAGAGGGCAGGGAGCAGAAGACAATATGAGGATCTTATATCTCTTTCATTTCAACATGCCTTTTATTGACAATATCTTCGTCAGGTCTCCTTTATAAACTAAATTCAGTTCATAATTAAATAATTTAAAGTTATTTTTCATTTGTGTAAAATACAATTTCAATATGGAAGCAAATCATCCAAATATATTACTTTATTTTAAAAGGTAAATGTCAATGTACAGTCTCCTATATTGGTTCAGAAGACATCCCACCATCTTGAAAACAACTGTCATTCTTTCATGTTCAAGTGGATTGTTGTTTTCTTTTACTTAAAAAATACCaatacctctgtctgtctctctgtcgctctccatAACTAGTGTTTTAACGTGGAAAGGGAAACAATACATTATACACTACAGAGAATAAACTGTACCAATTCAATGCTCTGTACATTATTGCATCAGAAAGCCACAACATATTGCAGCATCGTTTAAAACTAGGGATATTACATAGATATAAATGAAAGGCCCATGGTAACCCTGCCAAACAACAGGGTGATGCAAACAGGTTAACATCAGTTgaatttcaattcagtcaattcagtcaGCAAACTGAAATGAACTGAAGTTTAATTCCTGAATTCACGGTTTTGAAATGGAACAGACCTCATCCCTGGATACAAATGATGAACACTAATAGATTCTACCCTTCCTCTTAGAAAATAGTGACCGATGATTACATAATATACTGCAGAAACAAAGTACTGTAAGGGTCTAATCCTGACTTGAGCTCTGCACACTTAACTAACATGTTCTTGAAGAGACTTGAAGTCTCCTGTTGACATCAATGCATCTCAAGTTAAGATTCGGCCCTTATTAAGAAACCAAGAGAATGGTTTCTCTCTCTGAAGTGGGGACAATGAGAACACTGTTACTAAATAATTTGTTACTATGGCTATCTACTGTAAGTTGCTGCATCAGAAGTAAAGTAAACCAATAATACAGACTGTTTGATGATAAGAAGAGTTGTGGTGTAGAGATTCAGCTTATTGACTTACATAATACAGACAGAATAGAGACCAAAACTGCATTACTGTGTTACAGTCACTGACATCAAGCAACAACTGAAACATTTGACTGATTTCACACTACTGGGCCAGACCAAGCAGATCCAAGCTATACTGCTCGGGTCTGGTTATGCATCTACCGTAGTTGCTGGAACcgtgctggaaaggacaatgtgagAAGAAAATATTCAAGCCAGCTCAGTATGGTTCAGGTCGGCTCTATAGTGTGGATCAGGTATGACTGTCCTTCTGTCTGGGGGCTGTTATGATAAACACTGTCAAACACACGCAGCTAGAACTGTCCATTAATTTAATCAAATAGGAAGACTATGGGTATTCAAGTCATTCAGGAAGCAGTTTGATTCTCTTTATTATACCACAAGAATCCAATACTTAGACCCTCAGTGGTCTTAGCGGGCCCACTGAACCTCTGTGCTTCATGCCTCAGGGCAATGCACGCAGCCAGAGAAAGGTAAACAAGTTCAATCAAATAAATACACTGTTGTTTGTTGAAGCTTCGCAGTGCAGTAGTCCTCTCAGTTCAGTGCATTGGGTGGGTATTGTATGTAATAGGACATCATCCAGTATGCAGTGCACTCACTGCTCCACAAGGTCAGAGGTCCCCTGGTTCTCTGCTCATGACAGTTTCCCTCCGTGTTGCCTCTGGTGCCCTCTCTACCGATacactgggtcgtgttcattagggtacACCGTAAGCAAAATATTTTCGCAATGGGAgacaaaaacaagcatttcttattggacgaGCTCAGATAGTACCTCACCGTTTTGCTCAGTTTCCTCCCCATTGCACTCAGGCTCTGTCCATTTTCTTCCATTCCCTGCCTACTGAACACGACCCCTGTGTCAAAACCCAGGAATCAATATGGGGTGAAGAGGATAGAGCCGGTGGTGGGCCGGACTGGCCCTGGAGCAGCCCGGAGGAAGGAGGGCATGCAGCCTGGCAGGCCAGCAGTCTGAAAGATGGAGGCGTTGGGCCGCGGAtgcagggagatggaggggagggtggTGGGGCAGAAGGGGTTAGAGAGAAACGTAGCAGGGGAGATAGGCTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319802 lncRNA upstream 6126 60991906 ~ 61027640 (+) True G281976
TU319783 lncRNA upstream 10707 60967569 ~ 61023059 (+) True G281958
TU319795 lncRNA upstream 46627 60986538 ~ 60987139 (+) True G281970
TU319782 lncRNA upstream 67128 60966328 ~ 60966638 (+) True G281957
TU319542 lncRNA upstream 78431 60953140 ~ 60955335 (+) True G281754
TU320119 lncRNA downstream 169535 61206640 ~ 61223982 (+) True G282245
TU320237 lncRNA downstream 336623 61373728 ~ 61374361 (+) True G282351
TU320236 lncRNA downstream 337497 61374602 ~ 61374869 (+) True G282350
TU320243 lncRNA downstream 344119 61381224 ~ 61381473 (+) True G282357
TU320259 lncRNA downstream 360680 61397785 ~ 61398000 (+) True G282373
XM_021597524.2 mRNA upstream 379453 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 650414 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 747686 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 747689 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 763867 60267642 ~ 60269899 (+) True LOC110505381
XM_036974822.1 mRNA downstream 294254 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 294438 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 438771 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 552953 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 572756 61609861 ~ 61647253 (+) False LOC110504376
TU319499 other upstream 139988 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 139988 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 276416 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 743199 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 979349 60052716 ~ 60054417 (+) False G280315
TU320641 other downstream 920283 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 1156499 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 1330509 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1669226 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1979221 63016326 ~ 63022591 (+) True G284313

Expression Profile