RNA id: TU320260


Basic Information

Item Value
RNA id TU320260
length 417
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G282374
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61398045 ~ 61398461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgcctgcggctatggaatcctgacctgttcaccggacgtgctacctgtcccagacctattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccaaccctcatagcctggttcctctctaggtttcttcctaggttttggcctttttagggagtttttcctagccaacgtgcttcaacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320259 lncRNA upstream 45 61397785 ~ 61398000 (+) True G282373
TU320243 lncRNA upstream 16572 61381224 ~ 61381473 (+) True G282357
TU320236 lncRNA upstream 23176 61374602 ~ 61374869 (+) True G282350
TU320237 lncRNA upstream 23684 61373728 ~ 61374361 (+) True G282351
TU320119 lncRNA upstream 174063 61206640 ~ 61223982 (+) True G282245
TU320275 lncRNA downstream 11421 61409882 ~ 61410094 (+) True G282387
TU320287 lncRNA downstream 29822 61428283 ~ 61428579 (+) True G282399
TU320311 lncRNA downstream 108456 61506917 ~ 61511531 (+) True G282417
TU320367 lncRNA downstream 129553 61528014 ~ 61528255 (+) True G282458
TU320369 lncRNA downstream 136290 61534751 ~ 61535027 (+) True G282460
XM_036974822.1 mRNA upstream 27170 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA upstream 27170 61331543 ~ 61370875 (+) True LOC110520315
XM_021597524.2 mRNA upstream 743732 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 1014693 60382674 ~ 60383352 (+) True LOC118964303
NM_001124291.1 mRNA upstream 1111968 60277444 ~ 60286077 (+) True myl1
XM_036974824.1 mRNA downstream 77415 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 191597 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 211400 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA downstream 216682 61615143 ~ 61647253 (+) True LOC110504376
XM_021597554.2 mRNA downstream 250244 61648705 ~ 61663408 (+) True LOC110520321
TU319833 other upstream 360940 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 504267 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 504267 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 640695 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1107478 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 558927 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 795143 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 969153 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1307870 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1617865 63016326 ~ 63022591 (+) True G284313

Expression Profile