RNA id: TU320287


Basic Information

Item Value
RNA id TU320287
length 297
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G282399
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61428283 ~ 61428579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgacggcctaggaacagtgggttaactgccttgttcaggggcagaatgacagatttttaccttgtcagctcagggattcaatcaagcaacctttcggttactggcccaacactaaccactaggctacctgccaccccaacatTTTGTAATCCTTCCAGGTAATTTTGTCCAAAATCAAGGTTGTAGGTTTGGAATTTGGATTTGGAATGAAGGTTTtgatgtagagggtagtatcctgtataagtCCTTGTGGAAAAAATCTAGTTTATCAAaaaatcactctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320275 lncRNA upstream 18189 61409882 ~ 61410094 (+) True G282387
TU320260 lncRNA upstream 29822 61398045 ~ 61398461 (+) True G282374
TU320259 lncRNA upstream 30283 61397785 ~ 61398000 (+) True G282373
TU320243 lncRNA upstream 46810 61381224 ~ 61381473 (+) True G282357
TU320236 lncRNA upstream 53414 61374602 ~ 61374869 (+) True G282350
TU320311 lncRNA downstream 78338 61506917 ~ 61511531 (+) True G282417
TU320367 lncRNA downstream 99435 61528014 ~ 61528255 (+) True G282458
TU320369 lncRNA downstream 106172 61534751 ~ 61535027 (+) True G282460
TU320370 lncRNA downstream 107982 61536561 ~ 61536772 (+) True G282461
TU320371 lncRNA downstream 108982 61537561 ~ 61537765 (+) True G282462
XM_036974822.1 mRNA upstream 57408 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA upstream 57408 61331543 ~ 61370875 (+) True LOC110520315
XM_021597524.2 mRNA upstream 773970 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 1044931 60382674 ~ 60383352 (+) True LOC118964303
NM_001124291.1 mRNA upstream 1142206 60277444 ~ 60286077 (+) True myl1
XM_036974824.1 mRNA downstream 47297 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 161479 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 181282 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA downstream 186564 61615143 ~ 61647253 (+) True LOC110504376
XM_021597554.2 mRNA downstream 220126 61648705 ~ 61663408 (+) True LOC110520321
TU319833 other upstream 391178 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 534505 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 534505 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 670933 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1137716 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 528809 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 765025 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 939035 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1277752 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1587747 63016326 ~ 63022591 (+) True G284313

Expression Profile