RNA id: TU320378


Basic Information

Item Value
RNA id TU320378
length 259
lncRNA type intronic
GC content 0.52
exon number 1
gene id G282469
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61545386 ~ 61545644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATCACTGTGTATTGAGCTTTTGTCTGAGGCACTTGCTATAAAATCAGCTGAACAAAGAGTGAGTTGAGTCCGCTCTAAGGTCAGTAGGTTTGAAGCTCTCGCTTACACAACCTGAACTGCAGCTAGAGAGTCTGAGCTGAGGGAGATAGGGGGGAGTCATGActctctgtctaactctctccccttccctcaacgctcgccctctctcccccctgacCTCTCCCACTCTtcaccctgccctctctctctattccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320377 lncRNA upstream 935 61544206 ~ 61544451 (+) True G282468
TU320376 lncRNA upstream 3695 61541466 ~ 61541691 (+) True G282467
TU320372 lncRNA upstream 7166 61537955 ~ 61538220 (+) True G282463
TU320371 lncRNA upstream 7621 61537561 ~ 61537765 (+) True G282462
TU320370 lncRNA upstream 8614 61536561 ~ 61536772 (+) True G282461
TU320384 lncRNA downstream 7137 61552781 ~ 61553556 (+) True G282475
TU320388 lncRNA downstream 10309 61555953 ~ 61556172 (+) True G282477
TU320389 lncRNA downstream 10760 61556404 ~ 61556754 (+) True G282478
TU320391 lncRNA downstream 14828 61560472 ~ 61560815 (+) True G282480
TU320392 lncRNA downstream 15335 61560979 ~ 61561187 (+) True G282481
XM_036974824.1 mRNA upstream 39958 61475876 ~ 61505428 (+) True LOC110520316
XM_036974822.1 mRNA upstream 174511 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA upstream 174511 61331543 ~ 61370875 (+) True LOC110520315
XM_021597524.2 mRNA upstream 891073 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 1162034 60382674 ~ 60383352 (+) True LOC118964303
XM_036974825.1 mRNA downstream 44414 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 64217 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA downstream 69499 61615143 ~ 61647253 (+) True LOC110504376
XM_021597554.2 mRNA downstream 103061 61648705 ~ 61663408 (+) True LOC110520321
XM_021597565.2 mRNA downstream 227789 61773433 ~ 61832413 (+) False LOC110520324
TU319833 other upstream 508281 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 651608 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 651608 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 788036 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1254819 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 411744 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 647960 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 821970 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1160687 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1470682 63016326 ~ 63022591 (+) True G284313

Expression Profile