RNA id: TCONS_00030297


Basic Information

Item Value
RNA id TCONS_00030297
length 1123
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_014928
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 34281886 ~ 34283008 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACATTGTGGAAAACTGGATGGATTTAGACTTCTTACATGCAAGTAATTAAATCCAGAAAGACGGTTCCTTGAGTTAAGTTACAGTAAAATAGCAATAGTTGAGCTACTGTACAGTGAACTGTAGAATTACTGAAAGTGTAAAGAtgctttacagtatatttattttatcttgctgTAAATGATAATGTAGGAACTTCTGTAAGCACATGACGTTTCAAACGTTAATTTACATAAAGACGATTATTCAATGTCTGACAGAAAAATATAGGAGGTATTGCAGATTAGCAAATTATAACATTAAACAGACGTCTGagtgatttgtttgtgttgatgtAGAATGCACTTTTGTCAATACAGCTTAGGTTAgatacatgtaatattaatacagcAATGTTTTCTTCTGTTCATTTGGTGATACATTTATGAAAGTATAATTTTGAGCACACAAATCACAGAGGTAACATGACTTGTCTGGTTGTTATAGAGAAGGAAGCACACATGTTTGTGTGTTAGCTGATGCAGAGTGACTGAACAAATGCTACcatcatatttgtttaatattgttgtttCAAACTGCTATTAcaacaatttatttaatgttgatttatatgCCATTTCTGGGCTGGAGCAGGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAGTAAGATCATGTTATTACTTCCAATTCAGAACTCAAATGAAACTCAAAAAGTGTGCTGTTAAATGACTTCTTTATTAAGAGCTTTGCAAAATCTGAAATGTCCTCAGACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0016485 protein processing biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030296 lncRNA downstream 51601 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030295 lncRNA downstream 495183 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00029432 lncRNA downstream 1006897 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00029429 lncRNA downstream 1013760 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029413 lncRNA downstream 1649748 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00030298 lncRNA upstream 377704 34660712 ~ 34674853 (-) False XLOC_014929
TCONS_00030299 lncRNA upstream 377704 34660712 ~ 34674876 (-) False XLOC_014929
TCONS_00030300 lncRNA upstream 377704 34660712 ~ 34687530 (-) False XLOC_014929
TCONS_00030301 lncRNA upstream 377704 34660712 ~ 34687552 (-) False XLOC_014929
TCONS_00030302 lncRNA upstream 393996 34677004 ~ 34687552 (-) True XLOC_014929
TCONS_00029450 mRNA downstream 164830 34091552 ~ 34117056 (-) False XLOC_014926
TCONS_00029447 mRNA downstream 192583 34073877 ~ 34089303 (-) False XLOC_014925
TCONS_00029448 mRNA downstream 192681 34074217 ~ 34089205 (-) False XLOC_014925
TCONS_00029441 mRNA downstream 218319 33888548 ~ 34063567 (-) False XLOC_014923
TCONS_00029452 mRNA upstream 408637 34691645 ~ 34742440 (-) False XLOC_014930
TCONS_00029453 mRNA upstream 408638 34691646 ~ 34742440 (-) True XLOC_014930
TCONS_00029454 mRNA upstream 468679 34751687 ~ 34873566 (-) True XLOC_014931
TCONS_00029455 mRNA upstream 630847 34913855 ~ 34927201 (-) True XLOC_014932
TCONS_00029456 mRNA upstream 676959 34959967 ~ 34970312 (-) False XLOC_014933
TCONS_00029451 other downstream 186209 34092572 ~ 34095677 (-) True XLOC_014926
TCONS_00029449 other downstream 192581 34080946 ~ 34089305 (-) True XLOC_014925
TCONS_00029446 other downstream 303892 33977878 ~ 33977994 (-) True XLOC_014924
TCONS_00029444 other downstream 321160 33956826 ~ 33960726 (-) False XLOC_014923
TCONS_00029443 other downstream 366022 33888604 ~ 33915864 (-) False XLOC_014923
TCONS_00029472 other upstream 1137827 35420835 ~ 35420951 (-) True XLOC_014942
TCONS_00029473 other upstream 1138669 35421677 ~ 35428894 (-) True XLOC_014941
TCONS_00029481 other upstream 1179374 35462382 ~ 35465580 (-) True XLOC_014944
TCONS_00029490 other upstream 2944902 37227910 ~ 37228025 (-) True XLOC_014951
TCONS_00029492 other upstream 3354366 37637374 ~ 37637493 (-) True XLOC_014956

Expression Profile

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