RNA id: TU320397


Basic Information

Item Value
RNA id TU320397
length 1228
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G282484
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61564123 ~ 61565350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTACAAAAATATCCAATATATTTAGAGGAAATAAAGATAATCTCCCCCGATTGACTAAATGAGCTGGCTGCAGACAGGGTCCAATGACAAACAGGGCATTATTTACAACAGTGATATATTAGGATACAAGGGAAAAGGCACTCAGaaaagggggtagagaggggggatagTTTGAGGCTTTAGAAAGGGGGAGAGTCCCCCTCACCCGTTTCCTTCCCTCCAGTAATACAGTGATGTacaagggaaggagggggggaagGGGGGATTACAGTAAACTGGTGCTGGCGCCCTGTCCTGTCTGGATCAATCTAGGCACATCTGCCTGATTCCGACCATAAACAGGATTATAGGGGGACTTATCTGCTTGACGCTAATTGTTTTCGCAGTTTATGCACAAGCCAACTCTTTCAGGTGCTGCAACTCGGCATATAAAAACTCCATACACAGTGGTTGGCTGCCCGTGACTTCTTTCAGGCACAGGTCCATTCATAAAGTTGGCTGAGTTGTTTGGAACTTATTTTCGGTTATTTAGGGGTTTGGCAGGGGTTTGAATCTGTGAAACTAATTAGTGTAATGTTTTGGATTTGGACATTGCTGGTTTGGATGGGATGTATTGTCACACTGTGCATAGGCAATATAATGATATAGAGAGATGTGTCATGGCATTGAATTGCAACTTAATAACATGTTCATGTATTTGTATATTCTGCAGAGGATGTGGAGTATTGTGGAGAAATTATAAATGTTTTCAAATTTTATCTATCTTCTTAAAGTCTTTGAAGTCCTTGAAGTGAAACAGACATTGCAAAAAAAGGATTACTTACTACTATTAACAACTAGTCATTATGTTACAACTAGGGCTTTCAGAGTTAATCAGTttcgaagtcgatgcctctccttgttcgagcgGTGTTCGGTGTTCTAgtcatcgccgatccatttttcattttccatttgttttgtctcgttttACCACACAActggttctcatttccctcattatgtgttgtgtatttaaccctatgttccccccatgtctttgtgtggtattgtttattgtaagtgcacaTTTTGTTTGACTGGTGCGCGTCGAGTTATTTGTGCCCATAATTTGTATTTCTTATGCCGTTGGTTTtactattaaactgctccggctattatcaagttctgctctcctgcgtctgacttccctgccaccagatACGCACCACTTACAGAATACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320394 lncRNA upstream 391 61563464 ~ 61563732 (+) True G282483
TU320392 lncRNA upstream 2936 61560979 ~ 61561187 (+) True G282481
TU320391 lncRNA upstream 3308 61560472 ~ 61560815 (+) True G282480
TU320389 lncRNA upstream 7369 61556404 ~ 61556754 (+) True G282478
TU320388 lncRNA upstream 7951 61555953 ~ 61556172 (+) True G282477
TU320399 lncRNA downstream 3359 61568709 ~ 61569133 (+) True G282486
TU320459 lncRNA downstream 88200 61653550 ~ 61654197 (+) True G282538
TU320481 lncRNA downstream 128185 61693535 ~ 61698383 (+) True G282560
TU320559 lncRNA downstream 276463 61841813 ~ 61843829 (+) True G282634
TU320587 lncRNA downstream 279940 61845290 ~ 61849674 (+) True G282658
XM_036974824.1 mRNA upstream 58695 61475876 ~ 61505428 (+) True LOC110520316
XM_036974822.1 mRNA upstream 193248 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA upstream 193248 61331543 ~ 61370875 (+) True LOC110520315
XM_021597524.2 mRNA upstream 909810 60634539 ~ 60654313 (+) True tgfbr2l
XR_005051347.1 mRNA upstream 1180771 60382674 ~ 60383352 (+) True LOC118964303
XM_036974825.1 mRNA downstream 24708 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 44511 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA downstream 49793 61615143 ~ 61647253 (+) True LOC110504376
XM_021597554.2 mRNA downstream 83355 61648705 ~ 61663408 (+) True LOC110520321
XM_021597565.2 mRNA downstream 208083 61773433 ~ 61832413 (+) False LOC110520324
TU319833 other upstream 527018 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 670345 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 670345 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 806773 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1273556 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 392038 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 628254 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 802264 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1140981 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1450976 63016326 ~ 63022591 (+) True G284313

Expression Profile