RNA id: TU320459


Basic Information

Item Value
RNA id TU320459
length 377
lncRNA type intronic
GC content 0.36
exon number 3
gene id G282538
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61653550 ~ 61654197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGGTTTTATTTATCCCATTGTACTGAATCATCAGTATGAATACACAGGTTTTATTTATCCCATTGTACTGAATCATCAGTATGAACACACAGGTTTTATTTATCCCATTGTACTGAATCATCAGTATGAATACACAGGTTTTATTTATCCCATTGTACTGAATCATCAGTATGAATACACAGGTTTTATTTATCCCATTGTACTGAATCATCAGTATGAACACACAGGTTTTATTTATCCCATTGTACTGAATCATCAGTATGAACACACAGGTTTTATTTATCCCATTGTGCAGAGGAAGGGAAAGGGTTGGTACTGTTAATTGATGGAGGGTGTGCTGGCCCATATTCTCCTCAGAGAGAGTTTTTGGCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320399 lncRNA upstream 84417 61568709 ~ 61569133 (+) True G282486
TU320397 lncRNA upstream 88200 61564123 ~ 61565350 (+) True G282484
TU320394 lncRNA upstream 89818 61563464 ~ 61563732 (+) True G282483
TU320392 lncRNA upstream 92363 61560979 ~ 61561187 (+) True G282481
TU320391 lncRNA upstream 92735 61560472 ~ 61560815 (+) True G282480
TU320481 lncRNA downstream 39338 61693535 ~ 61698383 (+) True G282560
TU320559 lncRNA downstream 187616 61841813 ~ 61843829 (+) True G282634
TU320587 lncRNA downstream 191093 61845290 ~ 61849674 (+) True G282658
TU320640 lncRNA downstream 303191 61957388 ~ 61964066 (+) False G282707
TU320646 lncRNA downstream 327874 61982071 ~ 61982481 (+) True G282712
XM_036974825.1 mRNA upstream 6297 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA upstream 6297 61609861 ~ 61647253 (+) False LOC110504376
XM_036974827.1 mRNA upstream 6297 61615143 ~ 61647253 (+) True LOC110504376
XM_036974824.1 mRNA upstream 148122 61475876 ~ 61505428 (+) True LOC110520316
XM_036974822.1 mRNA upstream 282675 61331359 ~ 61370875 (+) False LOC110520315
XM_021597565.2 mRNA downstream 119236 61773433 ~ 61832413 (+) False LOC110520324
XM_036974833.1 mRNA downstream 119236 61773433 ~ 61832413 (+) False LOC110520324
XM_036974828.1 mRNA downstream 119237 61773434 ~ 61832413 (+) False LOC110520324
XM_036974829.1 mRNA downstream 119237 61773434 ~ 61832413 (+) False LOC110520324
XM_036974830.1 mRNA downstream 119237 61773434 ~ 61832413 (+) False LOC110520324
TU319833 other upstream 616445 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 759772 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 759772 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 896200 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1362983 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 303191 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 539407 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 713417 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 1052134 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1362129 63016326 ~ 63022591 (+) True G284313

Expression Profile